View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_28 (Length: 294)

Name: NF13173_low_28
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_28
NF13173_low_28
[»] chr5 (5 HSPs)
chr5 (1-277)||(28873455-28873731)
chr5 (1-239)||(28872042-28872286)
chr5 (3-105)||(2357666-2357774)
chr5 (1-49)||(3031459-3031507)
chr5 (235-276)||(9503928-9503969)
[»] chr7 (2 HSPs)
chr7 (1-244)||(44968595-44968843)
chr7 (3-133)||(35323996-35324133)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-105)||(34404-34503)
scaffold0014 (169-269)||(34590-34690)
[»] chr3 (4 HSPs)
chr3 (180-246)||(12221455-12221523)
chr3 (3-49)||(27237263-27237309)
chr3 (85-140)||(12221591-12221647)
chr3 (3-49)||(12221719-12221765)
[»] chr8 (2 HSPs)
chr8 (3-104)||(14685324-14685431)
chr8 (181-276)||(14685521-14685616)
[»] chr2 (6 HSPs)
chr2 (3-133)||(5989408-5989545)
chr2 (1-49)||(4285054-4285102)
chr2 (3-49)||(5983453-5983499)
chr2 (235-277)||(21794302-21794344)
chr2 (168-206)||(31468947-31468985)
chr2 (181-277)||(5983655-5983751)
[»] chr1 (1 HSPs)
chr1 (215-277)||(9426855-9426917)
[»] chr6 (2 HSPs)
chr6 (181-277)||(7501181-7501277)
chr6 (1-49)||(369231-369279)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 28873731 - 28873455
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873731 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 28873632  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttcatctctctctcaaaacaagaaaccctaatatcatcttcttcaattgtacac 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873631 gtaaagagtaagtttaatttcatcaataaaatttacaagttttattttcatctctctctcaaaacaagaaaccctaatatcatcttcttcaattgtacac 28873532  T
Q  201 agtttttgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcatt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873531 agtttttgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcatt 28873455  T

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Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28872286 - 28872042
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||||||||||    
T  28872286 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttt---tgttacatcac--gatgtataaatacttcattgctctt 28872192  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttc----atctctctctcaaaaca---------agaaaccctaatatcatcttc 187  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||     ||||||||||||||||         ||||||||||||| |||||||    
T  28872191 gtaaatagtaagttcaattt-atcaataaaatttacaagttttattttcgtctctctctctctcaaaacaagaaaccctagaaaccctaataccatcttc 28872093  T
Q  188 ttcaattgtacacagtttttgtgttgtttttcattcaatctttacatattgt 239  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  28872092 ttcaattgtacac-gtttttgtgttgtttttcatttaatctttacacattgt 28872042  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 2357774 - 2357666
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt--agttgttt----tgttgttacatcacttgatgtataaatacttcattgc 96  Q
    ||||||||||||||||||||||||||| ||||||| || || |||||    | ||||||    | |||||||||||||||||||||| ||||||||||      
T  2357774 tgaagtaactaactcaagttacttgcatgtgaagtaataagcttgttaggaatttgtttgaggttttgttacatcacttgatgtatacatacttcattat 2357675  T
Q  97 tcttgtaaa 105  Q
    |||||||||    
T  2357674 tcttgtaaa 2357666  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3031459 - 3031507
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  3031459 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 3031507  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 9503928 - 9503969
Alignment:
Q  235 attgttccataaaattggtataacaaagcctggttcattcat 276  Q
    |||||||||| |||||||||||||| |||||||||| |||||    
T  9503928 attgttccatcaaattggtataacagagcctggttcgttcat 9503969  T

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Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44968843 - 44968595
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    ||||||||||  |||||||||||||||||||| ||||||    
T  44968843 tgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgttctagttgt----ttgttacatcgtttgatgtataaatacttcatagctctt 44968748  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttca--tctctctctcaaaa---------caagaaaccctaatatcatcttctt 189  Q
    ||||| || |||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||         | |||||||||||||  ||||||||    
T  44968747 gtaaatagcaagttcaa-ttcataaataaaatttacaagttttattttcatctctctctctcaaaaatagaaaccctagaaaccctaatactatcttctt 44968649  T
Q  190 caattgtacacagtttttgtgttgtttttcattcaatctttacatattgttccat 244  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  44968648 caattgtacacagtttttgtgttg-ttttcattcaacctttacacattgttccat 44968595  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 35324133 - 35323996
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt-agtt-gttttg-----ttgttacatcacttgatgtataaatacttcattg 95  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||   |||| |||||      |||||||||||||||||||||| |||| |||||     
T  35324133 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgttaggagtttgttttcagattttgttacatcacttgatgtatatatacctcatta 35324034  T
Q  96 ctcttgtaaagagtaagttcaatttcatcaataaaatt 133  Q
    |||||||||| ||||| |||||||   |||||||||||    
T  35324033 ctcttgtaaatagtaatttcaattcattcaataaaatt 35323996  T

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Target: scaffold0014 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 34404 - 34503
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||| |||||||||| | ||||||| |||||||||  ||||  |||   ||||||||||||||||||||||||||||| || ||| ||    
T  34404 tgtgaagtaactaactaaagttacttgtatgtgaagtaatgagtttg--ttaggagtt---ttgttacatcacttgatgtataaatactttatagctatt 34498  T

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Target: scaffold0014; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 34590 - 34690
Alignment:
Q  169 aaaccctaatatcatcttcttcaattgtacacagtttt-tgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctgg 267  Q
    |||||||||| |||||||||||||||| ||||||||||  ||||||  |||||||||||||||| | | |||||||| ||||||||||| || || ||||    
T  34590 aaaccctaatctcatcttcttcaattgaacacagttttaagtgttg-gtttcattcaatctttatacactgttccatcaaattggtatagcagagtctgg 34688  T
Q  268 tt 269  Q
    ||    
T  34689 tt 34690  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 12221523 - 12221455
Alignment:
Q  180 tcatcttcttcaatt--gtacacagtttttgtgttgtttttcattcaatctttacatattgttccataa 246  Q
    |||||||||||||||  ||| |||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  12221523 tcatcttcttcaattttgtatacagttttagtgttggttttcattcaatctttacatattgttctataa 12221455  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 27237263 - 27237309
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  27237263 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgtt 27237309  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 12221647 - 12221591
Alignment:
Q  85 atacttcattgctcttgtaaagagtaagttcaatttca-tcaataaaatttacaagt 140  Q
    |||||||||| |||||||||| | | |||||||||||| ||||||||||||||||||    
T  12221647 atacttcattactcttgtaaatacttagttcaatttcattcaataaaatttacaagt 12221591  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 12221765 - 12221719
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||||    
T  12221765 tgaagtaactaactcaagttacttgcgtgagaagtaatgagtttgtt 12221719  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 14685324 - 14685431
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt--ttagttgttt----tgttgttacatcacttgatgtataaatacttcattgc 96  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||    | ||||||    | |||||||||||||||||||||| |||| ||||| |    
T  14685324 tgaagtaactaactcaagttacttgcatgtgaagtgataagtttgttaggaatttgtttcaggttttgttacatcacttgatgtatatatacgtcattac 14685423  T
Q  97 tcttgtaa 104  Q
    ||||||||    
T  14685424 tcttgtaa 14685431  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 14685521 - 14685616
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcat 276  Q
    ||||||||||||||| ||||||||||  |||||| ||| |||||||| || | | |||||| ||| ||||||||||| || |||||||||| |||||    
T  14685521 catcttcttcaattgaacacagttttaagtgttggttt-cattcaattttcatacattgtttcatcaaattggtatagcagagcctggttcgttcat 14685616  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 5989408 - 5989545
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt-agtt-gttttg-----ttgttacatcacttgatgtataaatacttcattg 95  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||   |||| |||||      |||||||||||||||||||||| |||| |||||     
T  5989408 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgttaggagtttgttttcagattttgttacatcacttgatgtatatatacctcatta 5989507  T
Q  96 ctcttgtaaagagtaagttcaatttcatcaataaaatt 133  Q
    |||||||||| ||| | | |||||   |||||||||||    
T  5989508 ctcttgtaaatagttattccaattcattcaataaaatt 5989545  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4285054 - 4285102
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  4285054 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 4285102  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5983453 - 5983499
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    |||||||||||| |||||||||||||| ||||||| || ||||||||    
T  5983453 tgaagtaactaaatcaagttacttgcatgtgaagtaataagtttgtt 5983499  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 21794344 - 21794302
Alignment:
Q  235 attgttccataaaattggtataacaaagcctggttcattcatt 277  Q
    |||||||||| |||||||||||||| |||||||||| ||||||    
T  21794344 attgttccatcaaattggtataacagagcctggttcgttcatt 21794302  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 31468985 - 31468947
Alignment:
Q  168 gaaaccctaatatcatcttcttcaattgtacacagtttt 206  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  31468985 gaaaccctaatctcatcttcttcaattgaacacagtttt 31468947  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 5983655 - 5983751
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcatt 277  Q
    ||||||||||||||| ||||| ||||  |||||| ||| |||||||| || | | |||| ||||| ||||||||||| || |||||||||| ||||||    
T  5983655 catcttcttcaattgaacacaattttaagtgttggttt-cattcaattttcatacattgctccatcaaattggtatagcagagcctggttcgttcatt 5983751  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 9426855 - 9426917
Alignment:
Q  215 ttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcatt 277  Q
    ||||||||||||||||| | |||||||||| ||||||||||| || || ||||||| ||||||    
T  9426855 ttttcattcaatctttagacattgttccatcaaattggtatagcagagtctggttccttcatt 9426917  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 7501277 - 7501181
Alignment:
Q  181 catcttcttcaattgtacacagtttttg-tgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcatt 277  Q
    ||||||||||||||| |||||||||| | ||||| ||| ||||| |  || | | |||||||||| |||||||||||||| |||||||||| ||||||    
T  7501277 catcttcttcaattgaacacagttttaggtgttggttt-cattctaatttcatacattgttccatcaaattggtataacagagcctggttcgttcatt 7501181  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 369279 - 369231
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  369279 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 369231  T

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