View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_32 (Length: 266)
Name: NF13173_low_32
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 39238476 - 39238304
Alignment:
| Q |
78 |
ctcgaaatcaaaatccaaattttgcaagcacacaaatcatcaccaactagagattagttgttgcggcgacatagggtaatcccatcagctatagatagct |
177 |
Q |
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| T |
39238476 |
ctcgaaataaaaatccaaatcttgcaagcacacaaatcatcaccaactagagattacttgatgcggcgacatagggtaatcccatcagctatagatagct |
39238377 |
T |
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| Q |
178 |
gacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaat |
250 |
Q |
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| T |
39238376 |
gacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaat |
39238304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 39050059 - 39049948
Alignment:
| Q |
139 |
tgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacg |
238 |
Q |
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|||| ||||||| |||||| |||||| ||| || ||||||||||| ||||| ||| |||||||||||| || || ||||||||||||||||||||||| |
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| T |
39050059 |
tgcgacgacataaggtaattccatcacctaccgaaagctgacaaatttcaatccttaaatcttgagctaaatacttgttgaactcaatcacataaccacg |
39049960 |
T |
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| Q |
239 |
taaattcctaat |
250 |
Q |
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| T |
39049959 |
taaattcataat |
39049948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 39290986 - 39291105
Alignment:
| Q |
130 |
attagttgttgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcac |
229 |
Q |
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| T |
39290986 |
attagatgatgcggcggcatagagtaattccatcgcctactgagagttgacagatctgaatccttaaatcctgggctaaatgtttgttaaactcaatcac |
39291085 |
T |
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| Q |
230 |
ataaccacgtaaattcctaa |
249 |
Q |
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| T |
39291086 |
atgaccacgaaaattcctaa |
39291105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 39056102 - 39056034
Alignment:
| Q |
174 |
agctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaa |
242 |
Q |
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|||||||||||||| | |||||||||| ||||| || ||| || | ||||||||||| |||||||||| |
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| T |
39056102 |
agctgacaaatctcgacccttgaatctttagctaaatatttgttaagctcaatcacatgaccacgtaaa |
39056034 |
T |
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