View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13173_low_37 (Length: 249)
Name: NF13173_low_37
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 371305 - 371388
Alignment:
| Q |
150 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
371305 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
371388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 371158 - 371248
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcat-------gaatcatcatttaaattcat-aaaaatcaattaaattcgttaatc |
93 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
371158 |
attcttccattagcaacaatataaatcaacaacaatcattattcatgaatcatcatttaaattcataaaaaatcaattaaatctgttaatc |
371248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 44218753 - 44218671
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaatc |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44218753 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaatc |
44218671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 21570145 - 21570064
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21570145 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaatccgttaat |
21570064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 44218613 - 44218531
Alignment:
| Q |
151 |
cataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
44218613 |
cataatccaccacaaataattcacgcctctttctatttgtatttatcccaacttacagtgtgtgcattgtcaaacaaaataaa |
44218531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 21570005 - 21569963
Alignment:
| Q |
150 |
ccataatccaccacaaataattcacgcctctttctatttgtat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21570005 |
ccataatccaccacaaataattcacgcctctttctatttgtat |
21569963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 47536436 - 47536353
Alignment:
| Q |
150 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47536436 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacagtgtgtgcatagtcaaacaaaataaa |
47536353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 47536575 - 47536493
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaatc |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47536575 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaatccgttaatc |
47536493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 23152962 - 23153045
Alignment:
| Q |
150 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23152962 |
ccataatccaccataaataattcacgcctctttctatttgtattgatcccaacttacagtgtgtacatagtcaaacaaaataaa |
23153045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 23152819 - 23152900
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaat |
92 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23152819 |
attcttctattagcaacaacataaatcagcaacaatcatcaatcatcatttaaattcataaaaatcaattaaatccgttaat |
23152900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 42962416 - 42962498
Alignment:
| Q |
11 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaattcgttaatc |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42962416 |
attcttccattagcaacaacataaatcagcaacaatcatgaatcatcatttaaattcataaaaatcaattaaatccgttaatc |
42962498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 42962555 - 42962638
Alignment:
| Q |
150 |
ccataatccaccacaaataattcacgcctctttctatttgtattgatcccaacttacggtgtgtgcatagtcaaacaaaataaa |
233 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42962555 |
ccataatacaccacaaataattcacgcctctttctatttgtattgatcccaacttacagtgtgtgcatagtcaaacaaaataaa |
42962638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 48574244 - 48574214
Alignment:
| Q |
45 |
atcatgaatcatcatttaaattcataaaaat |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48574244 |
atcatgaatcatcatttaaattcataaaaat |
48574214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University