View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_4 (Length: 705)

Name: NF13173_low_4
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_4
NF13173_low_4
[»] chr3 (8 HSPs)
chr3 (212-502)||(6760739-6761041)
chr3 (212-502)||(6455817-6456108)
chr3 (8-143)||(6760535-6760670)
chr3 (8-143)||(6456177-6456312)
chr3 (55-143)||(421282-421370)
chr3 (55-143)||(404707-404795)
chr3 (254-315)||(404609-404670)
chr3 (254-315)||(421407-421468)
[»] chr1 (5 HSPs)
chr1 (13-143)||(7277017-7277147)
chr1 (254-315)||(24360988-24361049)
chr1 (623-691)||(15536701-15536768)
chr1 (623-691)||(22545575-22545642)
chr1 (103-143)||(4203426-4203466)
[»] chr7 (6 HSPs)
chr7 (410-486)||(39675646-39675722)
chr7 (88-143)||(39675929-39675984)
chr7 (273-338)||(39675755-39675820)
chr7 (212-320)||(27981063-27981171)
chr7 (623-691)||(6674546-6674613)
chr7 (212-257)||(39675815-39675860)
[»] chr8 (3 HSPs)
chr8 (622-691)||(37244423-37244492)
chr8 (509-557)||(37244309-37244358)
chr8 (623-691)||(25062647-25062714)
[»] chr6 (2 HSPs)
chr6 (55-143)||(24181211-24181299)
chr6 (254-315)||(24181113-24181174)
[»] chr4 (1 HSPs)
chr4 (88-143)||(55355378-55355433)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 212 - 502
Target Start/End: Original strand, 6760739 - 6761041
Alignment:
Q  212 ggattttccaattttaagagggaacatgtaaatttgttgaaaaagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacgg 311  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||    
T  6760739 ggattttctaattttaagagtgaacatgtaaatttgttgaaaaagatgacttaccctgaagaaaagagaacacaaatatggagctataatttcggcatgg 6760838  T
Q  312 tggctggcagcggaaggaagagaaacggtgggtttggaaaataagttgcggaagcaat-------------aggactgattctattatttttttatccct 398  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||             | |||||||||||||| ||||||||||||    
T  6760839 tggctggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaagcaatataatttgaagcgatgactgattctatta-ttttttatccct 6760937  T
Q  399 nnnnnnnnttattttttatttaaaaattgaagaaactgtagcgcgtgtaaacacgcgcccgtaaaaattcgcatggcaaacgtccgtactgtatagcact 498  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6760938 aaaaaaaattattttttatttaaaaattgaagaaactgtagcgcgtgtaaacacgcgcccgtaaaaatttgcatggcaaacgtccgtactgtatagcact 6761037  T
Q  499 tctc 502  Q
    ||||    
T  6761038 tctc 6761041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 212 - 502
Target Start/End: Complemental strand, 6456108 - 6455817
Alignment:
Q  212 ggattttccaattttaagagggaacatgtaaatttgttgaaaaagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacgg 311  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6456108 ggattttctaattttaagagtgaacatgtaaatttgttgaaaaagatgacttaccctgaagaaaagagaacacaaatatggagctataattccggcacgg 6456009  T
Q  312 tggctggcagcggaaggaagagaaacggtgggtttggaaaataagttgcggaagcaatag-------------gactgattctattatttttttatccct 398  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||             |||||||||||||| |||||||||| |    
T  6456008 tggctggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaagcaatagaatttgaagcaatgactgattctatta-ttttttatccat 6455910  T
Q  399 -nnnnnnnnttattttttatttaaaaattgaagaaactgtagcgcgtgtaaacacgcgcccgtaaaaattcgcatggcaaacgtccgtactgtatagcac 497  Q
             ||||||||||||||||||||||||||| |||            ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6455909 aaaaaaaaattattttttatttaaaaattgaagaaattgt------------cacgcgcccgtaaaaattcgcatggcaaacgtccgtaatgtatagcac 6455822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 6760535 - 6760670
Alignment:
Q  8 cacagaaccaacaacaacaacacgcccctgaatgtcaataagagcacgtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtgg 107  Q
    |||| |||||||| |||||||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  6760535 cacaaaaccaacagcaacaacgtgcccctgaatgacaataagagcacgtcaaaccaataaattagcatttttgctaacagtaatctacaaatactagtgg 6760634  T
Q  108 atttaccatcaataattacgtctcccgtatcaaact 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  6760635 atttaccatcaataattacgtctcccgtatcaaact 6760670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 6456312 - 6456177
Alignment:
Q  8 cacagaaccaacaacaacaacacgcccctgaatgtcaataagagcacgtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtgg 107  Q
    |||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  6456312 cacaaaaccaacagcaacaacgcgcccctgaatgacaataagagcacgtcaaaccaataaattagcatttttgctaatagtaatctacaaatactagtgg 6456213  T
Q  108 atttaccatcaataattacgtctcccgtatcaaact 143  Q
    |||||||||||||||||||||| |||||||||||||    
T  6456212 atttaccatcaataattacgtcccccgtatcaaact 6456177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 421282 - 421370
Alignment:
Q  55 gtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    ||||||||||||||||| ||||| ||||||||  |||||||| |||| |||||||||||||||||||||||| |||||| |||||||||    
T  421282 gtcaaaccaatgaattaacatttctgctaacataaatctacacataccagtggatttaccatcaataattacatctcccatatcaaact 421370  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 404795 - 404707
Alignment:
Q  55 gtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    ||||||||||||||||| ||||| ||||||||  |||||||| |||| |||||||||||||||||||||||| |||| | |||||||||    
T  404795 gtcaaaccaatgaattaacatttctgctaacataaatctacacataccagtggatttaccatcaataattacatctctcatatcaaact 404707  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 404670 - 404609
Alignment:
Q  254 aagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacggtggc 315  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  404670 aagatgacttaccccgaagaaaagagaactcgaatatgaagctatagttccgtcgcggtggc 404609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 421407 - 421468
Alignment:
Q  254 aagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacggtggc 315  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  421407 aagatgacttaccccgaagaaaagagaactcgaatatgaagctatagttccgtcgcggtggc 421468  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 7277017 - 7277147
Alignment:
Q  13 aaccaacaacaacaacacgcccctgaatgtcaataagagcacgtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtggattta 112  Q
    |||||||| ||||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  7277017 aaccaacagcaacagcacgccccaggatgacaataagagcatgtcaaaccaatgaattagcatttctgctaacagtaatctacaaataccagtggattta 7277116  T
Q  113 ccatcaataattacgtctcccgtatcaaact 143  Q
    |||||||||||||| |||||| |||||||||    
T  7277117 ccatcaataattacatctcccatatcaaact 7277147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 24360988 - 24361049
Alignment:
Q  254 aagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacggtggc 315  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  24360988 aagatgacttaccccgaagaaaagagaactcgaatatgaagctatagttccgtcgcggtggc 24361049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 691
Target Start/End: Complemental strand, 15536768 - 15536701
Alignment:
Q  623 ttttcattaatgtgtactatttttctttttagagaaggaaatttgtattaatgatgtaattgtattatt 691  Q
    ||||||||||||||  || |||||  ||||||||||| |||||| ||||||| ||||||||||||||||    
T  15536768 ttttcattaatgtgc-ctgtttttgcttttagagaagcaaatttatattaataatgtaattgtattatt 15536701  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 691
Target Start/End: Complemental strand, 22545642 - 22545575
Alignment:
Q  623 ttttcattaatgtgtactatttttctttttagagaaggaaatttgtattaatgatgtaattgtattatt 691  Q
    ||||||||||||||  || ||||| |||||||| ||| |||||| |||||||||| |||||||||||||    
T  22545642 ttttcattaatgtgc-ctgtttttgtttttagaaaagcaaatttatattaatgatataattgtattatt 22545575  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 4203466 - 4203426
Alignment:
Q  103 agtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    |||||||||| ||||||||||||| |||||| |||||||||    
T  4203466 agtggatttatcatcaataattacatctcccatatcaaact 4203426  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 39675722 - 39675646
Alignment:
Q  410 ttttttatttaaaaattgaagaaactgtagcgcgtgtaaacacgcgcccgtaaaaattcgcatggcaaacgtccgta 486  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675722 ttttttatttaaaaattgaagatactgtagcgcgtgtaaacacgcgcccgtaaaaattcgcatggcaaacgtccgta 39675646  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 39675984 - 39675929
Alignment:
Q  88 taatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675984 taatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 39675929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 39675820 - 39675755
Alignment:
Q  273 aaaagagaacacgaatatggagctataattccggcacggtggctggcagcggaaggaagagaaacg 338  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  39675820 aaaagagaacaccaatatggagctataattccgacacgggggctggcagcggaaggaagagaaacg 39675755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 27981063 - 27981171
Alignment:
Q  212 ggattttccaattttaagagggaacatgtaaatttgttgaaaaagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacgg 311  Q
    |||||||||||||||||||  |||||||||||   |||||| |||||||||| ||||||||||||||  | |||||||| ||||||||  ||||||||||    
T  27981063 ggattttccaattttaagaatgaacatgtaaaaccgttgaagaagatgacttcccctgaagaaaagattatacgaatatagagctatagatccggcacgg 27981162  T
Q  312 tggctggca 320  Q
    ||| |||||    
T  27981163 tggttggca 27981171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 691
Target Start/End: Original strand, 6674546 - 6674613
Alignment:
Q  623 ttttcattaatgtgtactatttttctttttagagaaggaaatttgtattaatgatgtaattgtattatt 691  Q
    ||||||||||||||| || ||||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  6674546 ttttcattaatgtgt-ctgtttttgtttttagagaagcaaatttatattaatgatgtaattgtattatt 6674613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 39675860 - 39675815
Alignment:
Q  212 ggattttccaattttaagagggaacatgtaaatttgttgaaaaaga 257  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  39675860 ggattttccaattttaagagtgaacatgtaaatttgttgaaaaaga 39675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 37244423 - 37244492
Alignment:
Q  622 cttttcattaatgtgtactatttttctttttagagaaggaaatttgtattaatgatgtaattgtattatt 691  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37244423 ctttttattaatgtgtactatttttctttttagagaagaaaatttgtattaatgatgtaattgtattatt 37244492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 37244309 - 37244358
Alignment:
Q  509 ttaatacacataaataattgtaataac-ttttttagagtaaataatcgta 557  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  37244309 ttaatacacataaataattgtagtaactttttttagaataaataatcgta 37244358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 691
Target Start/End: Original strand, 25062647 - 25062714
Alignment:
Q  623 ttttcattaatgtgtactatttttctttttagagaaggaaatttgtattaatgatgtaattgtattatt 691  Q
    ||||||||||||||  || ||||| |||||||||||  |||| | ||||||||||||||||||||||||    
T  25062647 ttttcattaatgtgc-ctgtttttgtttttagagaattaaatatatattaatgatgtaattgtattatt 25062714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 24181299 - 24181211
Alignment:
Q  55 gtcaaaccaatgaattagcatttttgctaacaataatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    ||||||||||||||||| ||||| ||||||||  |||||||| |||| |||||||||||||||||||||||| |||||| |||||||||    
T  24181299 gtcaaaccaatgaattaacatttatgctaacataaatctacacataccagtggatttaccatcaataattacatctcccatatcaaact 24181211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 24181174 - 24181113
Alignment:
Q  254 aagatgacttaccctgaagaaaagagaacacgaatatggagctataattccggcacggtggc 315  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  24181174 aagatgacttaccccgaagaaaagagaactcgaatatgaagctatagttccgtcgcggtggc 24181113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 55355378 - 55355433
Alignment:
Q  88 taatctacaaatactagtggatttaccatcaataattacgtctcccgtatcaaact 143  Q
    |||||||||  ||| ||||||||||||||||||| |||| |||||| |||||||||    
T  55355378 taatctacacgtaccagtggatttaccatcaatagttacatctcccatatcaaact 55355433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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