View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_40 (Length: 241)
Name: NF13173_low_40
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 30285533 - 30285301
Alignment:
| Q |
1 |
tcagtatggctttccctgcaatcaagtaaaataagaaatgtcattctttataaaaaatttaacaagaccttgtcacttttcaatatatagacttttctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30285533 |
tcagtatggctttccctgcaatcaagtaaaataagaaatgtcattctttataaaaaatttaaaaagaccttgtcacttttcaatatatagacttttctat |
30285434 |
T |
|
| Q |
101 |
aatgatttaattatttaaaataaaatgaacagcaaaataattaattaccactaaggactacaagaatgaagtcagcatcattgtgttgtggaagaaagag |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30285433 |
aatgattaaattatttaaaataaaatgaacagcaaaataattaattaccactaacgactacaagaatgaagtcagcatcattgtgttgtggaagaaagag |
30285334 |
T |
|
| Q |
201 |
ggtgtgaggtttggagtgatattccaaaagtcg |
233 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
30285333 |
ggtgtgaggtttggagtgatattccaagagtcg |
30285301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 30313906 - 30313805
Alignment:
| Q |
135 |
aaataattaattaccactaaggactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcga |
234 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30313906 |
aaatgattaattaccactaaggactgcaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcga |
30313807 |
T |
|
| Q |
235 |
ta |
236 |
Q |
| |
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|| |
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| T |
30313806 |
ta |
30313805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 30297856 - 30297755
Alignment:
| Q |
135 |
aaataattaattaccactaaggactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcga |
234 |
Q |
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|||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
30297856 |
aaatgattaattaccactaagcactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcga |
30297757 |
T |
|
| Q |
235 |
ta |
236 |
Q |
| |
|
|| |
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|
| T |
30297756 |
ta |
30297755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 30303042 - 30302941
Alignment:
| Q |
135 |
aaataattaattaccactaaggactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcga |
234 |
Q |
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|||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
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| T |
30303042 |
aaatgattaattaccactaaggactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtggtattccaaaaggcga |
30302943 |
T |
|
| Q |
235 |
ta |
236 |
Q |
| |
|
|| |
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|
| T |
30302942 |
ta |
30302941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 30290350 - 30290261
Alignment:
| Q |
141 |
ttaattaccactaaggactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaag |
230 |
Q |
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||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290350 |
ttaattaccactaagcactgcaaggataaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaag |
30290261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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