View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_5 (Length: 683)

Name: NF13173_low_5
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_5
NF13173_low_5
[»] chr7 (7 HSPs)
chr7 (291-474)||(25674892-25675075)
chr7 (552-671)||(25675242-25675361)
chr7 (472-551)||(25675119-25675199)
chr7 (292-361)||(25675746-25675815)
chr7 (292-393)||(44390691-44390791)
chr7 (292-373)||(48627763-48627844)
chr7 (292-356)||(26582629-26582693)
[»] chr2 (13 HSPs)
chr2 (292-474)||(4855226-4855408)
chr2 (552-671)||(4854927-4855046)
chr2 (472-551)||(4855089-4855169)
chr2 (292-396)||(42330918-42331022)
chr2 (292-356)||(4854473-4854537)
chr2 (291-361)||(38823853-38823923)
chr2 (292-393)||(38823220-38823321)
chr2 (292-381)||(40321142-40321231)
chr2 (298-392)||(16870585-16870679)
chr2 (291-361)||(39062899-39062969)
chr2 (298-363)||(35029859-35029924)
chr2 (292-349)||(40320241-40320298)
chr2 (292-392)||(34229043-34229143)
[»] chr1 (3 HSPs)
chr1 (291-413)||(41459386-41459508)
chr1 (292-392)||(7338767-7338867)
chr1 (292-402)||(46178120-46178230)
[»] chr6 (1 HSPs)
chr6 (223-285)||(32211057-32211119)
[»] chr8 (7 HSPs)
chr8 (292-396)||(40030495-40030599)
chr8 (292-363)||(11519350-11519421)
chr8 (292-395)||(42578709-42578812)
chr8 (292-393)||(20168982-20169082)
chr8 (292-402)||(13017742-13017852)
chr8 (292-329)||(6462647-6462684)
chr8 (291-363)||(13017084-13017156)
[»] chr4 (7 HSPs)
chr4 (292-360)||(31414076-31414144)
chr4 (292-381)||(17869644-17869733)
chr4 (291-348)||(27339715-27339772)
chr4 (292-377)||(41327702-41327787)
chr4 (292-391)||(17273625-17273724)
chr4 (324-356)||(27860987-27861019)
chr4 (292-336)||(44096013-44096057)
[»] scaffold0098 (1 HSPs)
scaffold0098 (292-376)||(52264-52348)
[»] chr5 (3 HSPs)
chr5 (298-392)||(33530668-33530762)
chr5 (292-393)||(2398221-2398321)
chr5 (291-382)||(31607255-31607346)
[»] chr3 (4 HSPs)
chr3 (292-382)||(40613055-40613145)
chr3 (292-357)||(44637768-44637833)
chr3 (292-392)||(3799832-3799931)
chr3 (292-361)||(44636976-44637047)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 291 - 474
Target Start/End: Original strand, 25674892 - 25675075
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 390  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25674892 cgagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaa 25674991  T
Q  391 agattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 474  Q
    ||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||| ||||||||||||||||||||||    
T  25674992 agattagaaataagtattgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtgcttaactttcatcttcctct 25675075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 552 - 671
Target Start/End: Original strand, 25675242 - 25675361
Alignment:
Q  552 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatg 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25675242 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatg 25675341  T
Q  652 gaggcagcttgtaagtgatg 671  Q
    ||||||||||||||| ||||    
T  25675342 gaggcagcttgtaagggatg 25675361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 551
Target Start/End: Original strand, 25675119 - 25675199
Alignment:
Q  472 tctgcgccacccatctctgcc-tttgcggcgaatttaattgttgaaacttgaaacctctggcatcactgttagtggcggat 551  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||    
T  25675119 tctgcgccacccatctccgccgtttgcggcgaatttgattgttgatacttgaaacctttggcatcattgttagtggtggat 25675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 25675815 - 25675746
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 361  Q
    |||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||| ||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtgg 25675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 44390791 - 44390691
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 44390693  T
Q  392 ga 393  Q
    ||    
T  44390692 ga 44390691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 373
Target Start/End: Original strand, 48627763 - 48627844
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatc 373  Q
    ||||||||||||||||||||||   ||| || |||||||| |||| |||||||  |||| ||||| |||||| |||||||||    
T  48627763 gagttcatctttgctccatttaccattgctccatttactccttttgaatgcatgaatgtttgacatgtggaaaaaacaaatc 48627844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 26582693 - 26582629
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 356  Q
    |||||||||||| |||||||||| |||| || |||||||| |||| |||  | ||||||||||||    
T  26582693 gagttcatctttactccatttatatttgctccatttactccttttaaatttacagatgtgtgaca 26582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 292 - 474
Target Start/End: Complemental strand, 4855408 - 4855226
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaaa 4855309  T
Q  392 gattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 474  Q
    |||||||||||||||| ||||||||| ||||||||||||       |||||| ||||||| |  |||||||||||||||||||    
T  4855308 gattagaaataagtatcgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtcgttaactttcatcttcctct 4855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 552 - 671
Target Start/End: Complemental strand, 4855046 - 4854927
Alignment:
Q  552 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatg 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4855046 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatg 4854947  T
Q  652 gaggcagcttgtaagtgatg 671  Q
    ||||||||||||||| ||||    
T  4854946 gaggcagcttgtaagggatg 4854927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 472 - 551
Target Start/End: Complemental strand, 4855169 - 4855089
Alignment:
Q  472 tctgcgccacccatctctgcc-tttgcggcgaatttaattgttgaaacttgaaacctctggcatcactgttagtggcggat 551  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||    
T  4855169 tctgcgccacccatctccgccgtttgcggcgaatttgattgttgatacttgaaacctctggcatcattgttagtggtggat 4855089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 42331022 - 42330918
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    ||||||||||||||||||||||   ||| |||||||| |  ||||||||||||||||||||||||| ||  | ||| ||||||||||| |  ||||||||    
T  42331022 gagttcatctttgctccatttactcttgctcaatttatttcttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggttgagattaaaa 42330923  T
Q  392 gatta 396  Q
    |||||    
T  42330922 gatta 42330918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 4854473 - 4854537
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 356  Q
    ||||||||||||||||||||||||||   || |||||||| ||||||||| ||||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgaca 4854537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 38823923 - 38823853
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 361  Q
    ||||||||||||| || |||||| || |  ||||||||||||||||||||| |||||||||||||| ||||    
T  38823923 cgagttcatctttccttcatttaagtctcctcaatttactctttttcaatgtatagatgtgtgacatgtgg 38823853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 393
Target Start/End: Original strand, 38823220 - 38823321
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    ||||||||||||||||||||||| |||| || |||||||| |||| |||  | |||||||||||| |||||| ||| ||||  |||| | | ||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaatgtaaagacaaagattaaaa 38823319  T
Q  392 ga 393  Q
    ||    
T  38823320 ga 38823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 40321231 - 40321142
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 381  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 40321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 16870585 - 16870679
Alignment:
Q  298 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 392  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  16870585 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 16870679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 39062969 - 39062899
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 361  Q
    ||||| |||||||| |||||||||||||||||||||||| |  ||||||  ||||||||| ||||| ||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtgg 39062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 35029924 - 35029859
Alignment:
Q  298 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 363  Q
    |||||||||||||||| ||||  ||||||||| |  ||||||  ||||||||||||||| ||||||    
T  35029924 atctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtggaa 35029859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 40320241 - 40320298
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatg 349  Q
    ||||||||||||||||||||||   ||| || ||||| || |||||||||||||||||    
T  40320241 gagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatg 40320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 34229143 - 34229043
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||| | ||  ||||||||| |  ||| ||  ||||||||||||||| |||||| ||| ||| |||| ||||  ||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  392 g 392  Q
    |    
T  34229043 g 34229043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 291 - 413
Target Start/End: Complemental strand, 41459508 - 41459386
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41459508 cgagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatgtgtgacacgtggaacaaacaaatccaaagactatgattaaa 41459409  T
Q  391 agattagaaataagtattgttac 413  Q
    |||||||||||||||||||||||    
T  41459408 agattagaaataagtattgttac 41459386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 7338867 - 7338767
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||||||||  |||||||||||  ||||||  ||||||||||| ||| |||||| ||| |||  ||| || | |||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  392 g 392  Q
    |    
T  7338767 g 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 46178230 - 46178120
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | |||||||||| | |||||||  ||||||||  ||||||||    
T  46178230 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacacgtggcaaaaacaaaatcaaaggctcagattaaaa 46178131  T
Q  392 gattagaaata 402  Q
    ||||| |||||    
T  46178130 gattaaaaata 46178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 32211057 - 32211119
Alignment:
Q  223 ataatgtacataatttgttttaatctttattgtttccacatgatttgttgtaagcaatgacct 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32211057 ataatgtacataatttgttctaatctttattgtttccacatgatttgttgtaagcaatgacct 32211119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 40030599 - 40030495
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||||| ||  | ||| |||||||||||||  ||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T
Q  392 gatta 396  Q
    |||||    
T  40030499 gatta 40030495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 11519350 - 11519421
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 363  Q
    |||||||||||||||| ||||| |||| |||||||||| |  ||||||  ||||||||||||||| ||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtggaa 11519421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 395
Target Start/End: Original strand, 42578709 - 42578812
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||||||||| ||||||||| |  ||||||  ||||||||| ||||| |||| | ||| |||  ||| ||||  ||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  392 gatt 395  Q
    ||||    
T  42578809 gatt 42578812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 20169082 - 20168982
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 20168984  T
Q  392 ga 393  Q
    ||    
T  20168983 ga 20168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 13017852 - 13017742
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | ||||| |||| | |||||||  ||||||||  ||||||||    
T  13017852 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacatgtggcaaaaacaaaatcaaaggctcagattaaaa 13017753  T
Q  392 gattagaaata 402  Q
    ||||| |||||    
T  13017752 gattaaaaata 13017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 6462684 - 6462647
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttac 329  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttac 6462647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 13017084 - 13017156
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 363  Q
    ||||| |||||||||||||||||||   | || |||||| | | |||| ||||||||||| ||||||||||||    
T  13017084 cgagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatgtatgacacgtggaa 13017156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 31414076 - 31414144
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtg 360  Q
    |||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||    
T  31414076 gagttcatctttgctccatttatgtttgctccatttgctcattttcaatgcatagatgtgtgacacgtg 31414144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 17869644 - 17869733
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 381  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 17869733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 27339715 - 27339772
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagat 348  Q
    |||||||||||||||||||||||   || ||| |||||||| ||| ||||||||||||    
T  27339715 cgagttcatctttgctccatttagtattcttccatttactcatttccaatgcatagat 27339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 41327702 - 41327787
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaa 377  Q
    ||||||| |||| |||||||||  |||| |||||||| || ||||||||  ||||||||||||||  ||| | ||| |||||||||    
T  41327702 gagttcaactttactccatttagctttgctcaatttattccttttcaataaatagatgtgtgacatatggtaaaaataaatccaaa 41327787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 17273724 - 17273625
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaattta-ctctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 390  Q
    ||||| |||||||||||||||| || || |||||||| |||  || ||| |||||||||| |||||||||| | |||||||| ||| ||||  |||||||    
T  17273724 gagtttatctttgctccatttaagtgtgctcaatttatctc-attccaaagcatagatgtatgacacgtggcaaaaacaaattcaagggctgagattaaa 17273626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 27860987 - 27861019
Alignment:
Q  324 atttactctttttcaatgcatagatgtgtgaca 356  Q
    |||||||| ||||||||||||||||||||||||    
T  27860987 atttactccttttcaatgcatagatgtgtgaca 27861019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 44096057 - 44096013
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactcttttt 336  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  44096057 gagtccatctttactctatttatgattgttcaatttactcttttt 44096013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 52264 - 52348
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaa 376  Q
    ||||||||||||||||||||| |||||  || |||||||| |||||||||||||||||||||||| |||  | ||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 52348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 33530762 - 33530668
Alignment:
Q  298 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 392  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  33530762 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 33530668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 2398321 - 2398221
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||| | |  | |||||||||||| |||| | || |||||| |||||||  ||||||||    
T  2398321 gagttcatctttgctccatttttgtttgcttcatttactcttttt-agtttacagatgtgtgacatgtggtaaaatcaaatctaaaggctgagattaaaa 2398223  T
Q  392 ga 393  Q
    ||    
T  2398222 ga 2398221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 31607255 - 31607346
Alignment:
Q  291 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 382  Q
    |||||||||||||||||||||||   ||  || |||||||| |||||||||||| |||   |||||| ||||| ||| |||||||| |||||    
T  31607255 cgagttcatctttgctccatttaacgttcctccatttactccttttcaatgcatggataaatgacacatggaaaaaataaatccaagggcta 31607346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 40613055 - 40613145
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 382  Q
    ||||||||||||||||||||||   ||  || ||||| || |||| ||||||||||||| ||||| |||||| ||||||||| || |||||    
T  40613055 gagttcatctttgctccatttaaccttactccatttaatccttttgaatgcatagatgtttgacatgtggaaaaaacaaatctaatggcta 40613145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 44637833 - 44637768
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacac 357  Q
    ||||||||||||||||||| || || || || |||||||| |||||||  ||||||||||||||||    
T  44637833 gagttcatctttgctccatctaagtatgctccatttactccttttcaagacatagatgtgtgacac 44637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 3799832 - 3799931
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 391  Q
    |||| ||||||||||||||||| | ||| ||||||||  |  ||| |||||||||||||||||||| ||| | ||| ||||| ||||| |  ||||||||    
T  3799832 gagtccatctttgctccattta-gcttgctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaaataaatctaaaggttgagattaaaa 3799930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 44636976 - 44637047
Alignment:
Q  292 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatag--atgtgtgacacgtgg 361  Q
    |||||||||||||||||||||   |||  || |||||||| |||| |||||||||  |||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaatgcatagatatgtgtgacacgtgg 44637047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University