View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_6 (Length: 651)

Name: NF13173_low_6
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_6
NF13173_low_6
[»] chr8 (5 HSPs)
chr8 (281-633)||(31531753-31532104)
chr8 (1-105)||(31531626-31531732)
chr8 (80-141)||(10467573-10467634)
chr8 (80-141)||(12596872-12596933)
chr8 (87-141)||(16483762-16483816)
[»] chr7 (4 HSPs)
chr7 (16-141)||(25067670-25067797)
chr7 (39-143)||(28098548-28098652)
chr7 (293-390)||(22760869-22760967)
chr7 (84-129)||(38487350-38487395)
[»] chr3 (5 HSPs)
chr3 (290-385)||(39976400-39976496)
chr3 (10-144)||(34359346-34359482)
chr3 (80-144)||(22853461-22853523)
chr3 (82-127)||(23565273-23565318)
chr3 (104-144)||(41695419-41695459)
[»] chr2 (8 HSPs)
chr2 (11-144)||(855580-855715)
chr2 (80-139)||(27694603-27694662)
chr2 (318-373)||(42602577-42602632)
chr2 (284-373)||(19244132-19244222)
chr2 (87-141)||(31994819-31994873)
chr2 (290-390)||(14780512-14780613)
chr2 (82-127)||(41577450-41577495)
chr2 (81-141)||(39293200-39293260)
[»] chr6 (5 HSPs)
chr6 (80-141)||(12611813-12611874)
chr6 (80-141)||(4409543-4409604)
chr6 (81-144)||(3336076-3336139)
chr6 (80-141)||(4405864-4405925)
chr6 (82-127)||(15065422-15065467)
[»] chr4 (2 HSPs)
chr4 (87-144)||(38377823-38377880)
chr4 (332-385)||(24827836-24827889)
[»] chr5 (3 HSPs)
chr5 (82-127)||(41635869-41635914)
chr5 (318-390)||(16773813-16773885)
chr5 (318-390)||(34984812-34984884)
[»] chr1 (3 HSPs)
chr1 (283-355)||(21392878-21392951)
chr1 (87-144)||(50919376-50919432)
chr1 (318-390)||(21267991-21268063)
[»] scaffold0478 (1 HSPs)
scaffold0478 (81-141)||(3240-3300)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 281 - 633
Target Start/End: Original strand, 31531753 - 31532104
Alignment:
Q  281 ttaagaaattaaattagcccactcaaactcgtacgaggagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccgga 380  Q
    ||||||| ||||||| ||||| ||||||| ||||| |||||||  ||||| ||| |||||| ||||||| ||||||||||||||| ||||||| ||| |     
T  31531753 ttaagaagttaaattggcccattcaaactggtacg-ggagaattgaaccggagatcttgaggaggagcggactctcatgttccaaatcaataccaccagg 31531851  T
Q  381 ccaactcaagggtgttgagggtttaaaatgttaatgtagaaagaaatcaatttttatacatttagtgtaaa-ttttttatactaggtctacnnnnnnntt 479  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||       ||    
T  31531852 ccaactcaagggggttgagggtttaaaatgttaatgtagaaagaaatcaatttttatacattgagtgtaaatttttttatactaggtctacataaaaatt 31531951  T
Q  480 cctcaaaagcaaaactatcgtgcagnnnnnnnacatgtcatgctattacaccacaatatggtagtgccactttcttaagttatttcctaattttgttttt 579  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31531952 cctcaaaagcaaaactatcgtgcag-ttttttacatgtcatgctattacaccacaatatggtagtgccactttcttaagttatttcctaattttgttttt 31532050  T
Q  580 tacttcaaacatccatataatttgattagatttaatttaattggatgtatgtaa 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31532051 tacttcaaacatccatataatttgattagatttaatttaattggatgtatgtaa 31532104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31531626 - 31531732
Alignment:
Q  1 ctttctttaaaggattaaaagtatcctttttatgtaacaagttttcaaaagatggattattattaaaaac--tgatataacggaggattaaaattaccat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  31531626 ctttctttaaaggattaaaagtatcctttttatgtaacaagttttcaaaagatggactattattaaaaactatgatataacggaggattaaaattaccat 31531725  T
Q  99 tgaaatt 105  Q
    |||||||    
T  31531726 tgaaatt 31531732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 10467573 - 10467634
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    |||||||||||||||||||| |||||||| |  || ||||||||||||||  ||||||||||    
T  10467573 ggaggattaaaattaccattaaaattttataaggaataaacttaaaaatttgtgattttgta 10467634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12596933 - 12596872
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    |||||| ||||||||||||| |||||||| || || |||||||||||| | |||||||||||    
T  12596933 ggaggactaaaattaccattaaaattttatagggactaaacttaaaaacttatgattttgta 12596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 16483816 - 16483762
Alignment:
Q  87 taaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    ||||||||||||| ||||||||||| || |||||||||||| | |||||| ||||    
T  16483816 taaaattaccattaaaattttacagggactaaacttaaaaactcatgattctgta 16483762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 25067797 - 25067670
Alignment:
Q  16 taaaagtatcctttttatgtaacaagttttcaaaagatggattattattaaaaactg--atataacggaggattaaaattaccattgaaattttacagag 113  Q
    ||||||||||| |||| |||||  ||||||||||| | ||| |||| ||| |||||   |||| | |||||||||||||||||||| |||||||| |||     
T  25067797 taaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattatggaggattaaaattaccattaaaattttatagaa 25067698  T
Q  114 attaaacttaaaaattaatgattttgta 141  Q
    |  ||||||||||||| |||||||||||    
T  25067697 accaaacttaaaaatttatgattttgta 25067670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 28098652 - 28098548
Alignment:
Q  39 aagttttcaaaagatggattattattaaaaactgatataacggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgatttt 138  Q
    |||||||||||| ||||||||||  || |||||  ||| |  ||||| ||||||||||||| |||||||| | |||  ||||||||||| | ||||||||    
T  28098652 aagttttcaaaatatggattatttctacaaactactattatcgaggactaaaattaccattaaaattttataaagaccaaacttaaaaactcatgatttt 28098553  T
Q  139 gtaag 143  Q
    |||||    
T  28098552 gtaag 28098548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 22760967 - 22760869
Alignment:
Q  293 attagcccactcaaactcgta-cgaggagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaactcaag 390  Q
    ||||||||||||||| | | | || |||||||| ||||  |||||||||| |||||| ||||| || || |||||||||||| ||| ||||||| ||||    
T  22760967 attagcccactcaaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaag 22760869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 38487395 - 38487350
Alignment:
Q  84 gattaaaattaccattgaaattttacagagattaaacttaaaaatt 129  Q
    |||||||||||||||| |||||||| | ||| ||||||||||||||    
T  38487395 gattaaaattaccattaaaattttataaagactaaacttaaaaatt 38487350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 39976400 - 39976496
Alignment:
Q  290 taaattagcccactcaaactcgta-cgaggagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaac 385  Q
    |||||||| ||||||||||| ||| ||||||| ||| |||   ||||||||||||||||| |||||||| || |||||||||||| |||| ||||||    
T  39976400 taaattagtccactcaaactggtatcgaggaggatcgaacttgagaccttgagaaggagcacactctcaagtcccaagtcaataccaccgaaccaac 39976496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 34359482 - 34359346
Alignment:
Q  10 aaggattaaaagtatcctttttatgtaacaagttttcaaaagatggattattattaaaaactg--atataacggaggattaaaattaccattgaaatttt 107  Q
    ||||| ||||| ||||| |||| ||||| |||||||||||| | |||  ||| ||| |||||   ||||   |||||| ||||||||||||| |||||||    
T  34359482 aaggactaaaattatccattttttgtaaaaagttttcaaaacagggaccatttttacaaactataatattttggaggaataaaattaccattaaaatttt 34359383  T
Q  108 acagagattaaacttaaaaattaatgattttgtaagg 144  Q
    | |  || |||||||||||| | ||||||||||||||    
T  34359382 atatggactaaacttaaaaactcatgattttgtaagg 34359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 22853461 - 22853523
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgtaagg 144  Q
    |||||| ||||||||||||| |||||||  ||||| ||||||| |||||| ||| ||||||||||    
T  22853461 ggaggactaaaattaccattaaaatttt--agagactaaacttgaaaatttatggttttgtaagg 22853523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 23565273 - 23565318
Alignment:
Q  82 aggattaaaattaccattgaaattttacagagattaaacttaaaaa 127  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||    
T  23565273 aggattaaaattaccattaaaattttatatcgattaaacttaaaaa 23565318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 41695459 - 41695419
Alignment:
Q  104 ttttacagagattaaacttaaaaattaatgattttgtaagg 144  Q
    ||||| ||| |||||||||||||||| ||||||||||||||    
T  41695459 ttttatagaaattaaacttaaaaatttatgattttgtaagg 41695419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 855715 - 855580
Alignment:
Q  11 aggattaaaagtatcctttttatgtaacaagttttcaaaagatggattattattaaaaactg--atataacggaggattaaaattaccattgaaatttta 108  Q
    |||| ||||| ||| | |||| ||||| |||||||||||| ||||| ||||  || |||||   |||| || ||||| ||||||||||||| ||||||||    
T  855715 aggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactacaatatcaccgaggactaaaattaccattaaaatttta 855616  T
Q  109 cagagattaaacttaaaaattaatgattttgtaagg 144  Q
     || || |||||||||||| | ||||||||||||||    
T  855615 tagggactaaacttaaaaactcatgattttgtaagg 855580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 27694603 - 27694662
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttg 139  Q
    ||||||||||||||||| || |||||| ||||  |||||||||||||| | |||||||||    
T  27694603 ggaggattaaaattacctttaaaatttgacaggaattaaacttaaaaactcatgattttg 27694662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 42602632 - 42602577
Alignment:
Q  318 gagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatac 373  Q
    |||||||||||| |||||||||||||||||| ||||| || || ||||| ||||||    
T  42602632 gagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatac 42602577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 19244222 - 19244132
Alignment:
Q  284 agaaattaaattagcccactcaaactcgtacgag-gagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatac 373  Q
    ||||| |||||||||||||||||| | | || || ||||||| ||||  |||||||| | |||||| |||||||| || ||||||||||||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaatac 19244132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 31994819 - 31994873
Alignment:
Q  87 taaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    ||||||||| ||| |||||||| || |||||||||||||||||  ||||||||||    
T  31994819 taaaattactattaaaattttaaagggattaaacttaaaaatttgtgattttgta 31994873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 14780613 - 14780512
Alignment:
Q  290 taaattagcccactcaaactcgta-cgaggagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaactca 388  Q
    |||||||||||||||||| | | | || |||| ||| ||||  ||||||||| ||||||| || |||||  |  ||||||||||||||||||||||| ||    
T  14780613 taaattagcccactcaaattggcatcggggaggatcgaacctgagaccttgaaaaggagcacattctcaaatctcaagtcaatactaccggaccaaccca 14780514  T
Q  389 ag 390  Q
    ||    
T  14780513 ag 14780512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 41577495 - 41577450
Alignment:
Q  82 aggattaaaattaccattgaaattttacagagattaaacttaaaaa 127  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||    
T  41577495 aggattaaaattaccattaaaattttatatcgattaaacttaaaaa 41577450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 39293200 - 39293260
Alignment:
Q  81 gaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    ||||| ||||||||||||| |||||||| || |||||||| || |||||  ||||||||||    
T  39293200 gaggactaaaattaccattaaaattttatagggattaaacctagaaattcgtgattttgta 39293260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12611874 - 12611813
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    |||||| ||||||||||||| |||||||| || ||||||| ||||||||| |||||||||||    
T  12611874 ggaggactaaaattaccattaaaattttagagggattaaatttaaaaattcatgattttgta 12611813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 4409543 - 4409604
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    |||||| ||||||||||||||| |||||| || ||||||||||||||| |  ||||||||||    
T  4409543 ggaggactaaaattaccattgatattttatagggattaaacttaaaaacttgtgattttgta 4409604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 3336076 - 3336139
Alignment:
Q  81 gaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgtaagg 144  Q
    ||||| ||||||||||| | |||||||| || |  |||||||||||||| ||||||||||||||    
T  3336076 gaggactaaaattaccactaaaattttatagggtctaaacttaaaaatttatgattttgtaagg 3336139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 4405864 - 4405925
Alignment:
Q  80 ggaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    ||||||| |||||||||||| | |||||| || || |||||||||||| | |||||||||||    
T  4405864 ggaggataaaaattaccattaatattttatagggactaaacttaaaaacttatgattttgta 4405925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 15065422 - 15065467
Alignment:
Q  82 aggattaaaattaccattgaaattttacagagattaaacttaaaaa 127  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||    
T  15065422 aggattaaaattaccattaaaattttatatcgattaaacttaaaaa 15065467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 38377880 - 38377823
Alignment:
Q  87 taaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgtaagg 144  Q
    ||||||||||||| |||||||| || || ||||||||||||||  |||||||||||||    
T  38377880 taaaattaccattaaaattttatagggactaaacttaaaaatttgtgattttgtaagg 38377823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 24827889 - 24827836
Alignment:
Q  332 agaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaac 385  Q
    |||||| ||| |||||||||||| || || |||||||||||| |||||||||||    
T  24827889 agacctcgaggaggagcgcactcccaggtcccaagtcaataccaccggaccaac 24827836  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 41635869 - 41635914
Alignment:
Q  82 aggattaaaattaccattgaaattttacagagattaaacttaaaaa 127  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||    
T  41635869 aggattaaaattaccattaaaattttatatcgattaaacttaaaaa 41635914  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 16773885 - 16773813
Alignment:
Q  318 gagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaactcaag 390  Q
    ||||||| ||||  |||||| ||| |||||| ||||| || || |||||||||||| ||| ||||||||||||    
T  16773885 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaag 16773813  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 34984884 - 34984812
Alignment:
Q  318 gagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaactcaag 390  Q
    ||||||| |||| ||||||||||| |||||| ||||| || |||||||| |||||| ||  ||||||| ||||    
T  34984884 gagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaag 34984812  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 21392951 - 21392878
Alignment:
Q  283 aagaaattaaattagcccactcaaactcgtac-gaggagaatcaaaccgaagaccttgagaaggagcgcactct 355  Q
    ||||| ||||||||||||||||||||| | || |||||| ||| ||||  |||||||||| |||||| ||||||    
T  21392951 aagaagttaaattagcccactcaaactggcacagaggaggatcgaacctgagaccttgaggaggagcacactct 21392878  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 50919376 - 50919432
Alignment:
Q  87 taaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgtaagg 144  Q
    ||||||||||||| |||||||| || || ||||||| |||||| ||||||||||||||    
T  50919376 taaaattaccattaaaattttatagggactaaactt-aaaatttatgattttgtaagg 50919432  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 21267991 - 21268063
Alignment:
Q  318 gagaatcaaaccgaagaccttgagaaggagcgcactctcatgttccaagtcaatactaccggaccaactcaag 390  Q
    |||||||||||| ||||||| ||| |||||| ||||| || || ||||| |||||||||  | ||||||||||    
T  21267991 gagaatcaaacccaagacctagaggaggagcacactcccaagtcccaagccaatactactagcccaactcaag 21268063  T

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Target: scaffold0478 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 3300 - 3240
Alignment:
Q  81 gaggattaaaattaccattgaaattttacagagattaaacttaaaaattaatgattttgta 141  Q
    ||||| ||||||||||||| |||||| | || |||||| |||||||| | |||||||||||    
T  3300 gaggactaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgta 3240  T

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