View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_9 (Length: 595)
Name: NF13173_low_9
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 576
Target Start/End: Original strand, 53345702 - 53346258
Alignment:
| Q |
14 |
agagagtatatcaattaaaagtgattatatctgcctctcttcccccttactccagcaacgtagaataattattatggagacaacaataattttttagagt |
113 |
Q |
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| T |
53345702 |
agagagtatatcaattaaaagtgattatatctgtctctcttcccccttactccagcaacgaagattaattattatggagacaacaataattttttagagt |
53345801 |
T |
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| Q |
114 |
tatagacgcaaacatagcaaacaatatgattaccggatgtctaaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatc |
213 |
Q |
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| T |
53345802 |
tatagacgcaaacatagcaaacagtatgattaccggatgtctaaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatc |
53345901 |
T |
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| Q |
214 |
ctaccccacccggccacgggttgatccatcggtagcaaaacacaagaaaatatagctaatgcatgataatgaatttaattttactttcagattaaacatc |
313 |
Q |
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| T |
53345902 |
ctaccccacccggccacgggttgatccatcggtagcaaaacacaagaaaatatagctaatgcatgataatgaat----------tttcagattaaacatc |
53345991 |
T |
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| Q |
314 |
acgtgtagtccttacagtgctaaaaccttta----taattgttagagacaagaattttcatacttcattactagtctatttcaagaccaactggtaatag |
409 |
Q |
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| T |
53345992 |
acgtgtagtccttacagtgctaaaacctttataattaattgttagagacaagaattttcatacttcattactagtctatttcaagaccaactggtaatag |
53346091 |
T |
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| Q |
410 |
attgaagnnnnnnngttctttctgtatatactttcgtgtctcgtgataaccagcaactttacagttacataatagcaaatacaattatttacattatagg |
509 |
Q |
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| T |
53346092 |
attgaagtttttttgttctttctgtatatactttcgtgtctcgtgataaccagcaactttacagttacataatagcacatacaattatttacattatagg |
53346191 |
T |
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| Q |
510 |
ctataatttccacaaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataac |
576 |
Q |
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| T |
53346192 |
ctataatttccacaaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataac |
53346258 |
T |
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