View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13174_high_1 (Length: 706)
Name: NF13174_high_1
Description: NF13174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13174_high_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 658; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 12 - 706
Target Start/End: Complemental strand, 445716 - 445022
Alignment:
| Q |
12 |
tcatcatgacatgcttcaactactgccgcaagcaaatttataacgtcttgttgatgtggctgatagcatatatcacaatggtcatacttcagttatatat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445716 |
tcatcatgacatgcttcaactactgccgcaagcaaatttacaacgtcttgttgatgtggctgatagcatatatcacaatggtcatacttcagttatatat |
445617 |
T |
|
| Q |
112 |
agaataccaaattccacgtaatatatcaaataagatacatggatatatttctgaacaaaagggtaaaagtccaacaacgctaacttgtgacgaccaacta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
445616 |
agaataccaaattccacgtaatatatcaaataagatacatggatatatttctgaacaaaagggtaaaattccaacaacgctaacttgtgacgaccaacta |
445517 |
T |
|
| Q |
212 |
ttcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatgtaatcttgaatacccatgagccgat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445516 |
ttcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatgtaatcttgaatacccatgagccgat |
445417 |
T |
|
| Q |
312 |
atgaaaaggaattgcacgtannnnnnnataacattacatagaaatgcttatttgataatgagtaatgcacctcagattcttcattatatgtctgaaggca |
411 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445416 |
atgaaaaggaattgcacgtatttttttataacattgcatagaaatgcttatttgataatgagtaatgcacctcagattcttcattatatgtctgaaggca |
445317 |
T |
|
| Q |
412 |
ggagaacagcttctcagcaaatccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatccaagtccaaaatgaaactacaatggtgatc |
511 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445316 |
ggagaacagcttctcagcaaaaccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatccaagtccaaaatgaaactacaatggtgatc |
445217 |
T |
|
| Q |
512 |
acaaacctgtctatctatcatatggtttagtggtgaatagtaatcgttgttgattctttcagctaatggtttttgcagacttttcctgttgtaaggcagt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445216 |
acaaacctgtctatctatcatatggtttagtggtgaatagtaatcgttgttgattctttcagctaatggtttttgcagacttttcctgttgtaaggcagt |
445117 |
T |
|
| Q |
612 |
ctgtttcctaatttccttagctgatacattgttaaatctcggtggttttcctgggatttgttaagggacaccatcaattacagacaacttaatat |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445116 |
ctgtttcctaatttccttagctgatacattgttaaatctcggtggttttcctgggatttgttaagggacaccatcaattacagacaacttaatat |
445022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 88 - 549
Target Start/End: Original strand, 464713 - 465177
Alignment:
| Q |
88 |
aatggtcatacttcagttat-atatagaataccaaattccacgtaatatatcaaataagatacatggatatatttctgaacaaaagggtaaaagtccaac |
186 |
Q |
| |
|
|||||||| |||| |||||| || |||||||| |||| ||| || | |||||| ||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
464713 |
aatggtcagacttaagttattatgcagaataccgaatttcacctattttatcaattaaaatacctggatatatttccgaacaaaagggtaaaagtccaac |
464812 |
T |
|
| Q |
187 |
aacgctaacttgtgacgaccaactattcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatg |
286 |
Q |
| |
|
| || ||||| |||| | |||| || ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
464813 |
agcgttaactggtgaagtccaattactcgagcaatcaatttcaacatcatcatcttaacctaaaatatacacatggtaattgcataaactagtaaatatg |
464912 |
T |
|
| Q |
287 |
taatcttgaatacccatgagccgatatgaaaaggaattgcacgtannnnnnnataacattacatagaaatgcttatttgataatgag---taatgcacct |
383 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| |||||||| || ||||||||| | |||||||||||||||||| |||| |||| ||||| |
|
|
| T |
464913 |
taatattgaataaccatgagcagatatgaaaa-gaattgcaagtcttcttttataacattatacagaaatgcttatttgatattgagtaataattcacct |
465011 |
T |
|
| Q |
384 |
cagattcttcattatatgtctgaaggcaggagaacagcttctcagcaaatccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatcca |
483 |
Q |
| |
|
||||| |||| ||| | |||||| | ||||||||| |||| ||||| | ||||||||||||||| ||||||||||| |||||||| | ||||||||| |
|
|
| T |
465012 |
cagatccttctttaaagtgctgaagacgagagaacagcctctctgcaaaactctgcagaccatatgggattgaatgttgatgatccaaaaccaaaatcca |
465111 |
T |
|
| Q |
484 |
agtccaaaatgaaactacaatggtgatcacaaacctgtctatctatcatatggtttagtggtgaat |
549 |
Q |
| |
|
| ||||||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
465112 |
aaaccaaaatgaaactacggtaacgatcacaaacctgtttatctgtcagatggtttagtggtgaat |
465177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 39113818 - 39113927
Alignment:
| Q |
145 |
gatacatggatatatttctgaacaaaagggtaaaagtccaacaacgctaacttgtgacgaccaactattcgagcaataaatttcagcatcatcatcttaa |
244 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||| |||||| ||||| |||| | |||| | ||||||| || | ||||| |||||||||||| | |
|
|
| T |
39113818 |
gatacctggatatatttctgaagataagggtaaaagtttaacaacattaactggtgaagcccaattgttcgagctatcactttcaacatcatcatcttga |
39113917 |
T |
|
| Q |
245 |
cctaaaattt |
254 |
Q |
| |
|
|||||||||| |
|
|
| T |
39113918 |
cctaaaattt |
39113927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University