View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13174_high_4 (Length: 490)

Name: NF13174_high_4
Description: NF13174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13174_high_4
NF13174_high_4
[»] chr3 (12 HSPs)
chr3 (23-485)||(24112077-24112537)
chr3 (104-276)||(4244090-4244262)
chr3 (136-286)||(8109381-8109531)
chr3 (26-131)||(5699823-5699931)
chr3 (218-281)||(19264274-19264338)
chr3 (106-180)||(4514450-4514524)
chr3 (156-279)||(4252642-4252766)
chr3 (164-210)||(15647410-15647455)
chr3 (140-178)||(17034749-17034787)
chr3 (25-81)||(17034631-17034687)
chr3 (163-199)||(17239379-17239415)
chr3 (163-199)||(46350303-46350339)
[»] chr8 (10 HSPs)
chr8 (45-286)||(28801017-28801260)
chr8 (69-277)||(20084923-20085135)
chr8 (29-281)||(29771879-29772132)
chr8 (29-281)||(29757729-29757983)
chr8 (136-178)||(7321711-7321753)
chr8 (163-199)||(17526188-17526224)
chr8 (148-199)||(18679473-18679525)
chr8 (148-199)||(18718662-18718714)
chr8 (140-184)||(19007968-19008012)
chr8 (216-248)||(30213938-30213970)
[»] chr1 (13 HSPs)
chr1 (25-281)||(17088799-17089058)
chr1 (23-281)||(21721293-21721554)
chr1 (25-148)||(43282626-43282750)
chr1 (218-281)||(14969044-14969108)
chr1 (136-227)||(19965554-19965644)
chr1 (218-281)||(23486222-23486285)
chr1 (106-169)||(14580916-14580980)
chr1 (229-281)||(30497605-30497657)
chr1 (144-281)||(43282937-43283077)
chr1 (218-281)||(16534038-16534103)
chr1 (240-281)||(19965695-19965737)
chr1 (113-181)||(31584588-31584656)
chr1 (218-281)||(15440379-15440443)
[»] scaffold0329 (1 HSPs)
scaffold0329 (23-281)||(3984-4245)
[»] chr4 (7 HSPs)
chr4 (29-210)||(20245115-20245294)
chr4 (29-279)||(12190794-12191035)
chr4 (217-281)||(20243614-20243679)
chr4 (26-193)||(4746426-4746596)
chr4 (140-181)||(16405166-16405207)
chr4 (217-281)||(12235887-12235953)
chr4 (163-199)||(54679588-54679624)
[»] chr7 (10 HSPs)
chr7 (134-281)||(8259045-8259193)
chr7 (40-83)||(4450828-4450871)
chr7 (112-180)||(7561251-7561319)
chr7 (140-181)||(10647074-10647115)
chr7 (25-81)||(20094923-20094979)
chr7 (229-279)||(23800010-23800061)
chr7 (217-281)||(5075751-5075816)
chr7 (25-77)||(5265126-5265178)
chr7 (111-158)||(27707584-27707631)
chr7 (163-199)||(28622818-28622854)
[»] chr6 (6 HSPs)
chr6 (142-281)||(6561275-6561414)
chr6 (150-246)||(29031694-29031789)
chr6 (218-278)||(15586259-15586320)
chr6 (140-181)||(17291327-17291368)
chr6 (245-281)||(11130525-11130561)
chr6 (249-281)||(21946555-21946587)
[»] scaffold0217 (1 HSPs)
scaffold0217 (112-198)||(7154-7240)
[»] chr2 (9 HSPs)
chr2 (106-180)||(23959186-23959260)
chr2 (218-286)||(27760766-27760835)
chr2 (54-181)||(19878268-19878398)
chr2 (136-183)||(22268457-22268504)
chr2 (23-65)||(18038227-18038269)
chr2 (218-267)||(24109670-24109720)
chr2 (218-287)||(24109859-24109929)
chr2 (218-279)||(26704219-26704281)
chr2 (249-281)||(22268358-22268390)
[»] chr5 (9 HSPs)
chr5 (136-181)||(17338360-17338405)
chr5 (112-197)||(20689844-20689928)
chr5 (111-181)||(12860078-12860148)
chr5 (140-247)||(25936508-25936614)
chr5 (23-81)||(25936396-25936454)
chr5 (218-281)||(20689776-20689840)
chr5 (229-281)||(36740719-36740773)
chr5 (184-281)||(19642349-19642447)
chr5 (222-279)||(22185628-22185687)
[»] scaffold0040 (1 HSPs)
scaffold0040 (218-277)||(8195-8256)
[»] scaffold0804 (1 HSPs)
scaffold0804 (106-169)||(633-697)
[»] scaffold0010 (1 HSPs)
scaffold0010 (218-281)||(135747-135811)
[»] scaffold0146 (1 HSPs)
scaffold0146 (163-199)||(14784-14820)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Complemental strand, 24112537 - 24112077
Alignment:
Q  23 ggcacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaataataagactgcagtttttacaagtgctcttactctgtca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24112537 ggcacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaataataagactgcagtttttacaagtgctcttactctgtca 24112438  T
Q  123 aattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttaca 222  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  24112437 aattcaaaaaacaca--aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaagagtctgactttgtattgcaatttcttaca 24112340  T
Q  223 cctctaattgtatatctagtgtaaaccaaacaaacttttatttgattaagttagattgtcaaaataaaagttgggggaaagttatatggaatccatatgt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24112339 cctctaattgtatatctagtgtaaaccaaacaaacttttatttgattgagttagattgtcaaaatacaagttgggggaaagttatatggaatccatatgt 24112240  T
Q  323 tcctccctctaaattccttttggtttggagattattccacaacagactgccaactgatgagaacttgctatctagaggtctatacttcccatctgtctgt 422  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24112239 tcctccctctaaattccttttgatttggagattattccaccacagactgccaactgatgagaacttgctatctagaggtctatacttcccatctgtctgt 24112140  T
Q  423 aacttgtgttgtaaggaacctgaaacatctaagcatctannnnnnngctgcacctttgcttct 485  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  24112139 aacttgtgttgtaaggaacctgaaacatctaagcatctattttttggctgcacctttgcttct 24112077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 104 - 276
Target Start/End: Complemental strand, 4244262 - 4244090
Alignment:
Q  104 aagtgctcttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactt 203  Q
    |||||| | ||||||| |||||||||||  | |||||||||||||||||||||||| | |||  |||||||||||||  |||||||||||||||| |||     
T  4244262 aagtgcccctactctgccaaattcaaaag-cgcataaacacttaagaatttcttacgaagtttttatcttagaaattataaagtcttaaaagtcttactc 4244164  T
Q  204 tgttttgcaatatcttacacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttag 276  Q
    | ||||| |||   |||||||||| |||||||||| ||||| ||| |||||||  |||||||||||||||||||    
T  4244163 tattttgtaattgtttacacctctgattgtatatcaagtgtaaaaacaaacaacattttatttgattaagttag 4244090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 8109531 - 8109381
Alignment:
Q  136 cataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtat 235  Q
    |||||||| |||||||| |||||| | ||||||||||| ||||||| || ||||||| ||||| | | || |||| |||   |||||||||| ||| |||    
T  8109531 cataaacagttaagaatctcttactaagttcatatcttggaaattctaa-gtcttaagagtcttattctgctttgtaattgattacacctctgattctat 8109433  T
Q  236 atctagtgtaaa-ccaaacaaacttttatttgattaagttagattgtcaaaa 286  Q
    ||| |||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  8109432 atcaagtgtaaaaccaaacaatcttttatttgattaatttagattgtaaaaa 8109381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 5699823 - 5699931
Alignment:
Q  26 acctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa-ataataaga--ctgcagtttttacaagtgctcttactctgtca 122  Q
    ||||||||||||| ||||| ||||||| |||||||| ||| | ||||||||||||| | || ||||  ||| ||||||||||| | | |||||||| |||    
T  5699823 acctctccaacgtctctcaattccttcactatataatgagttgaagacttgaagaacacaacaagactctgtagtttttacaattacccttactctatca 5699922  T
Q  123 aattcaaaa 131  Q
    |||||||||    
T  5699923 aattcaaaa 5699931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 19264338 - 19264274
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 281  Q
    |||||||||| |||||||||  ||||||||  ||||||| |||||||||||||||||||||||||    
T  19264338 ttacacctctgattgtatattaagtgtaaaatcaaacaatcttttatttgattaagttagattgt 19264274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 4514524 - 4514450
Alignment:
Q  106 gtgctcttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 180  Q
    |||| |||||||||| ||||||||||  |||||| |||||||||||||||||||| | |||||||| |||||||||    
T  4514524 gtgcccttactctgttaaattcaaaag-cacatagaacacttaagaatttcttactaagttcatatgttagaaatt 4514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 279
Target Start/End: Complemental strand, 4252766 - 4252642
Alignment:
Q  156 ttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaaac-caaaca 254  Q
    |||||| ||| || |||||||||||| |||||||||| ||||| ||| | ||||  |||   |||||||| |||||||| | | | ||||||  ||||||    
T  4252766 ttaccaagtttatttcttagaaattcaaaagtcttaagagtcttactctattttttaattgtttacacctataattgtaaaacaaatgtaaaaacaaaca 4252667  T
Q  255 aacttttatttgattaagttagatt 279  Q
    | ||||||||| |||||||||||||    
T  4252666 atcttttatttcattaagttagatt 4252642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 15647455 - 15647410
Alignment:
Q  164 ttcatatcttagaaattccaaagtcttaaaagtctgactttgttttg 210  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||    
T  15647455 ttcatatcttagaaattctaaagtcttaagagtctga-tttgttttg 15647410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 17034749 - 17034787
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaa 178  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  17034749 aacacttaagaatttcttactaagttcatatcttagaaa 17034787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 17034631 - 17034687
Alignment:
Q  25 cacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa 81  Q
    |||||||||||||| |||||  |||||  |||||||||||| | |||||||||||||    
T  17034631 cacctctccaacgtctctcaaatccttgcctatataaggagtttaagacttgaagaa 17034687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 17239379 - 17239415
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17239379 gttcatatcttagaaattctaaagtcttaagagtctg 17239415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 46350303 - 46350339
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  46350303 gttcatatcttagaaattctaaagtcttaagagtctg 46350339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 28801017 - 28801260
Alignment:
Q  45 tttccttctctatataaggagctaaagacttgaagaaataataaga---ctgcagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaa 141  Q
    ||||| || |||| ||||||||| |||||||||||||||||  | |   |||||||||| |||||||| |||||||||||||||||||||  | | ||||    
T  28801017 tttccatccctatgtaaggagctgaagacttgaagaaataaacaaaactctgcagttttaacaagtgcccttactctgtcaaattcaaaag-cgcgtaaa 28801115  T
Q  142 cacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctag 241  Q
     |||| |||||||||||||| |||||||||||| |||||| |||||||||| | ||| ||||||||||| ||| ||||||||| ||||||||||||  ||    
T  28801116 tacttgagaatttcttaccaagttcatatcttataaattctaaagtcttaagaatcttactttgttttgtaatttcttacacccctaattgtatatgaag 28801215  T
Q  242 tgt-aaaccaaacaaacttttatttgattaagttagattgtcaaaa 286  Q
    ||| ||||||||||| | ||||||||||||||||| ||||| ||||    
T  28801216 tgtaaaaccaaacaatc-tttatttgattaagttaaattgtaaaaa 28801260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 20085135 - 20084923
Alignment:
Q  69 aagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggtt 165  Q
    |||||||||| |||| |||||||||  | |||||||||||||||  ||| | ||||||||||||||||  |||||||| ||||||||||||||||| |||    
T  20085135 aagacttgaaaaaatcaataagactctgtagtttttacaagtgccattaatatgtcaaattcaaaaaag-cataaacatttaagaatttcttaccaagtt 20085037  T
Q  166 catatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatctt-acacctctaattgtatatctagtgt--aaaccaaacaaactttta 262  Q
     ||||||||||||||  |||||||||  ||||| ||| ||||||| | | | || |||||| |  ||||||||| |||||  ||| ||||||| ||||||    
T  20085036 tatatcttagaaattataaagtcttaggagtctaactgtgttttgtattttgttcacacct-ttgttgtatatcaagtgtaaaaatcaaacaacctttta 20084938  T
Q  263 tttgattaagttaga 277  Q
    |||||||||||||||    
T  20084937 tttgattaagttaga 20084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 29771879 - 29772132
Alignment:
Q  29 tctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa-ataataagactg--cagtttttacaagtgctcttactctgtcaaat 125  Q
    |||||||||| |||||  | ||||||||||||||||| | ||||||||||||| | || ||||||   || |||| ||  |||| |||||||||||||||    
T  29771879 tctccaacgtctctcaaatacttctctatataaggagatgaagacttgaagaacacaacaagactcttcaattttaacttgtgc-cttactctgtcaaat 29771977  T
Q  126 tcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacct 225  Q
    | ||||  | | ||||||||||||||| | |||| | |||||||||||||||||| | ||||||| | |||||  || | ||||| |||   ||||| ||    
T  29771978 ttaaaag-cgcgtaaacacttaagaatgttttactaagttcatatcttagaaatt-ctaagtctttagagtcttgctctattttgtaattgattacatct 29772075  T
Q  226 ctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    || |  ||||||| ||||| |||||||| || ||||||||||||| |||||||||||    
T  29772076 ctgacagtatatcaagtgtaaaaccaaataatcttttatttgattgagttagattgt 29772132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 29757729 - 29757983
Alignment:
Q  29 tctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa-ataataaga--ctgcagtttttacaagtgctcttactctgtcaaat 125  Q
    |||||||||| |||||  ||||||||||||||||||| | ||||||||||||| | || ||||  || ||  ||| ||  |||| |||||||| ||||||    
T  29757729 tctccaacgtctctcaaatccttctctatataaggagatcaagacttgaagaacacaacaagactcttcaactttaacttgtgcccttactctatcaaat 29757828  T
Q  126 tcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacct 225  Q
    |  |||| |||||||| ||||||   ||| |||| | |||  |||||||||||||   ||||||| |||||||  || | ||||| |||   ||||||||    
T  29757829 t-taaaagcacataaatacttaatttttttttactaagtttgtatcttagaaatt-ataagtctttaaagtctttctctattttgtaattgattacacct 29757926  T
Q  226 ctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    ||||||| ||||| ||||| |||||||| ||  |||||| |||||||||||||||||    
T  29757927 ctaattgaatatcaagtgtaaaaccaaataatattttatctgattaagttagattgt 29757983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 7321711 - 7321753
Alignment:
Q  136 cataaacacttaagaatttcttaccaggttcatatcttagaaa 178  Q
    |||||||||||||||||||||||| | ||||| ||||||||||    
T  7321711 cataaacacttaagaatttcttactaagttcagatcttagaaa 7321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 17526188 - 17526224
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17526188 gttcatatcttagaaattctaaagtcttaagagtctg 17526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 18679525 - 18679473
Alignment:
Q  148 agaatttcttacca-ggttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||| || |||||||||||||||||||| | |||||||| ||||||    
T  18679525 agaatttcttatcaaggttcatatcttagaaattctagagtcttaagagtctg 18679473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 18718714 - 18718662
Alignment:
Q  148 agaatttcttacca-ggttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||| || |||||||||||||||||||| | |||||||| ||||||    
T  18718714 agaatttcttatcaaggttcatatcttagaaattctagagtcttaagagtctg 18718662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 19008012 - 19007968
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaattccaa 184  Q
    ||||| |||||||||||||| | |||||||||||| |||||||||    
T  19008012 aacacataagaatttcttactaagttcatatcttataaattccaa 19007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 30213970 - 30213938
Alignment:
Q  216 tcttacacctctaattgtatatctagtgtaaac 248  Q
    ||||||||||||||||||||||| |||||||||    
T  30213970 tcttacacctctaattgtatatcaagtgtaaac 30213938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 17088799 - 17089058
Alignment:
Q  25 cacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaataa---taagactgcagtttttacaagtgctcttactctgtc 121  Q
    ||||||| |||| | | ||||||||||| |||||||||||| | ||||||||||||| |||   | ||  || ||||||||||||||| |||||||||||    
T  17088799 cacctcttcaacctctttcatttccttccctatataaggagatgaagacttgaagaagtaaacatgagtttgtagtttttacaagtgcccttactctgtc 17088898  T
Q  122 aaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttac 221  Q
    ||||||||||    ||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||| ||||| ||| | ||||| |||  |||||    
T  17088899 aaattcaaaagtg-cataaacacttaagaatttattaccaagttcatatcttaaaaattctaaagtcttaatagtcttactctattttgtaattgcttac 17088997  T
Q  222 acctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    || ||| |||||||||| ||| | |||||||| ||  ||||||||||||||||||||||||    
T  17088998 acatctgattgtatatcaagtttaaaaccaaaaaatattttatttgattaagttagattgt 17089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 281
Target Start/End: Original strand, 21721293 - 21721554
Alignment:
Q  23 ggcacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaataat-aagact--gcagtttttacaagtgctcttactctg 119  Q
    |||||||||||||||| ||||| ||| ||| |||||| ||||||  |||||||||| ||| ||  ||||||  |||  |||||| ||||| ||||||||     
T  21721293 ggcacctctccaacgtctctcaattctttccctatatcaggagccgaagacttgaaaaaaaaaacaagactttgcaaattttactagtgcccttactcta 21721392  T
Q  120 tcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatctt 219  Q
    ||||||||||||  | ||||||||||| | ||||| |||||| |||||||||||| |||||| |||||||||| ||||| ||| |||||||||||   ||    
T  21721393 tcaaattcaaaag-cgcataaacactttataatttattaccaagttcatatcttaaaaattctaaagtcttaagagtcttactctgttttgcaattgttt 21721491  T
Q  220 acacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||||||||||||| ||||| |||||||| ||  | | ||||||||||||||||||||    
T  21721492 acacctctaattgtatatcaagtgtaaaaccaaataatttgtcatttgattaagttagattgt 21721554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 43282626 - 43282750
Alignment:
Q  25 cacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaataataaga--ctgcagtttttacaagtgctcttactctgtca 122  Q
    |||||||||||||| ||||||||||||  |||||||||||||| ||||||| |||||  |||||||  ||||||||||||||||||| |||||||| |||    
T  43282626 cacctctccaacgtctctcatttcctttcctatataaggagctgaagacttaaagaataaataagactctgcagtttttacaagtgcccttactctatca 43282725  T
Q  123 aattcaaaaaacacataaacacttaa 148  Q
    ||||| |||| | |||||||||||||    
T  43282726 aattc-aaaagcgcataaacacttaa 43282750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 14969044 - 14969108
Alignment:
Q  218 ttacacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| | |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  14969044 ttacacctttgattgtatatcaagtgtgaaaccaaacaatcttttatttgattaagttagattgt 14969108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 19965554 - 19965644
Alignment:
Q  136 cataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctct 227  Q
    ||||||||||| | |||||||||| | ||||||||||||||||||| |||||||| | ||||| ||| ||||||| |||| || ||||||||    
T  19965554 cataaacacttcataatttcttactaagttcatatcttagaaattctaaagtctt-agagtcttactctgttttgtaatagctgacacctct 19965644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 23486285 - 23486222
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaaccaaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||| |||||    
T  23486285 ttacacctctaattgtatattaagtgtaaatcaaacaatcttttatttgataaagttatattgt 23486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 14580916 - 14580980
Alignment:
Q  106 gtgctcttactctgtcaaattcaaaaaa-cacataaacacttaagaatttcttaccaggttcata 169  Q
    |||| |||||||||||||||||||||   || | ||||||||||||||||||||||| |||||||    
T  14580916 gtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcata 14580980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 30497657 - 30497605
Alignment:
Q  229 attgtatatctagtgtaaaccaaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| | ||||||||||||| |  |||||||||||||||||||||||||    
T  30497657 attgtataacaagtgtaaaccaaatattcttttatttgattaagttagattgt 30497605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 43282937 - 43283077
Alignment:
Q  144 cttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaa-agtctgact-ttgttttgcaatatcttacacctctaattgtatatctag 241  Q
    ||||| ||||| |||||| ||| ||||||||||||||| ||||||||||| ||| | ||| |  ||||  |||   ||| || ||| |||||||||  ||    
T  43282937 cttaataattttttaccatgtttatatcttagaaattctaaagtcttaaagagtgttactatatttttataattgtttatacatctgattgtatataaag 43283036  T
Q  242 tgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    ||| ||||||||||| |||||||||||| ||||||||||||    
T  43283037 tgtaaaaccaaacaatcttttatttgatcaagttagattgt 43283077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 16534103 - 16534038
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaacca--aacaaacttttatttgattaagttagattgt 281  Q
    |||||||||| |||||||||| |||||||| ||  || ||  ||||||||||||||||||||||||    
T  16534103 ttacacctctgattgtatatcaagtgtaaaacacaaataattttttatttgattaagttagattgt 16534038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 19965695 - 19965737
Alignment:
Q  240 agtgtaaa-ccaaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  19965695 agtgtaaatccaaacaatcttttatttgattaagttagattgt 19965737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 31584588 - 31584656
Alignment:
Q  113 tactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatc-ttagaaattc 181  Q
    |||||| ||||||||||||  | ||||||||||||||||||| |||| | ||||||||| ||||||||||    
T  31584588 tactctatcaaattcaaaag-cgcataaacacttaagaatttattactaagttcatatctttagaaattc 31584656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 15440443 - 15440379
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| | |||||||||| |||||||| | ||||||  |||||||||||| |||||||||||    
T  15440443 ttacacctatgattgtatatcaagtgtaaaactaaacaattttttatttgatttagttagattgt 15440379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 4245 - 3984
Alignment:
Q  23 ggcacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctg 119  Q
    ||||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||  ||  ||||||||||||   |||||||     
T  4245 ggcacttctccaatgtatcacattttcttctctatataaggagataaagacttgaagaaattaataagactctgctatttttacaagtgtcattactctt 4146  T
Q  120 tcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatctt 219  Q
     |||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||| ||| | ||| | | |   ||    
T  4145 ccaaattgaaaaa-cgcataaacacttaagaatttcttaccaagttcatatcttagaaattctaaagtctttagagtcttactctatttggtacttgttt 4047  T
Q  220 acacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| |||||||||| ||| | |||||||||||   ||||||| || ||||||||||||    
T  4046 acacctctgattgtatatcaagtataaaaccaaacaattgtttatttaataaagttagattgt 3984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 20245294 - 20245115
Alignment:
Q  29 tctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctgtcaaat 125  Q
    |||||||||| ||| |  ||||||| ||||||||||||| || ||||| |||||| ||  |||||  |||||||||||||||| | ||||||| ||||||    
T  20245294 tctccaacgtctctaaaatccttctttatataaggagctgaaaacttggagaaatcaacgagactctgcagtttttacaagtgtttttactctatcaaat 20245195  T
Q  126 tcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttg 210  Q
    ||||||       |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||| ||||| |||||    
T  20245194 tcaaaagc-----aaacacttaagaatttcttatcaagttcatatcttagaaattctaaagttttaaaagtcttactttattttg 20245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 12191035 - 12190794
Alignment:
Q  29 tctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaat-aataaga--ctgcagtttttacaagtgctcttactctgtcaaat 125  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||| |  ||||  ||||| | |||||||||    |||||||| |||||    
T  12191035 tctccaacgtctcttatttccttctctatataaggagcttaagacttcaagaaatgagcaagactctgcaatatttacaagtttcattactctgccaaat 12190936  T
Q  126 tcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacct 225  Q
    |  |||| || ||||||||||||||||           |||||||||||||||||  |||||||||| ||||| ||||||||||| |||   ||||||||    
T  12190935 t-gaaaagcatataaacacttaagaat-----------ttcatatcttagaaattttaaagtcttaagagtcttactttgttttgtaattgtttacacct 12190848  T
Q  226 ctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagatt 279  Q
     | |||||||||  ||||| ||||  ||||| | |||||||||||||| ||||||    
T  12190847 ttgattgtatataaagtgtaaaactgaacaatc-tttatttgattaagctagatt 12190794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 20243679 - 20243614
Alignment:
Q  217 cttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagattgt 281  Q
    ||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  20243679 cttacacatctaattgtatatcaagtgtaaaaccaaacaatcttttatttgattaagttagattgt 20243614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 4746426 - 4746596
Alignment:
Q  26 acctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaaat--aataagact--gcagtttttacaagtgctcttactctgtc 121  Q
    ||||||||||||| |||||  |||||  |||||||||||||| ||||||||||||||   || ||| ||  |||||||| ||  |||| |||||||| |     
T  4746426 acctctccaacgtctctcaaatccttgcctatataaggagcttaagacttgaagaaaagcaacaagtctctgcagttttaact-gtgcccttactctata 4746524  T
Q  122 aaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaa 193  Q
    ||  ||||||  |||||| |||||||||||||||||||| | || |||||||||||||||| | |||||||||    
T  4746525 aacatcaaaag-cacatataacacttaagaatttcttactaagtacatatcttagaaattctatagtcttaaa 4746596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 16405166 - 16405207
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  16405166 aacacttaagaatttcttactaggttcatatcttagaaattc 16405207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 12235953 - 12235887
Alignment:
Q  217 cttacacctctaattgtatatctagtgtaaac--caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||||| |||||||||| ||||||||   || |||| |||||||||||||||||||||||||    
T  12235953 cttacacctctgattgtatatcaagtgtaaattacatacaatcttttatttgattaagttagattgt 12235887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 54679624 - 54679588
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  54679624 gttcatatcttagaaattccagagtcttaagagtctg 54679588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 281
Target Start/End: Complemental strand, 8259193 - 8259045
Alignment:
Q  134 cacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgt 233  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||||  || ||||||| |||||  || | ||||||| |   | ||||||||||| ||    
T  8259193 cacataaacacttaataatttcttactaagttcatttcttagaaattttaa-gtcttaagagtcttgctctattttgcatttgttcacacctctaatcgt 8259095  T
Q  234 atatctagtgtaaac--caaacaaacttttatttgattaagttagattgt 281  Q
    |||||||||| |||   ||||||| |||||||||||||||||||||||||    
T  8259094 atatctagtgaaaaaatcaaacaatcttttatttgattaagttagattgt 8259045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 4450871 - 4450828
Alignment:
Q  40 tctcatttccttctctatataaggagctaaagacttgaagaaat 83  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4450871 tctcatttcattctctatataaggagctaaagacttgaagaaat 4450828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 7561251 - 7561319
Alignment:
Q  112 ttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 180  Q
    ||||| ||||||||||||||  |||||| |||||||||||||||||||| | |||||||||||| |||||    
T  7561251 ttactatgtcaaattcaaaag-cacatagaacacttaagaatttcttactaagttcatatcttaaaaatt 7561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 10647074 - 10647115
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  10647074 aacacttaagaatttcttactaagttcatatcttagaaattc 10647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 20094979 - 20094923
Alignment:
Q  25 cacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa 81  Q
    ||||| ||||| || |||||| |||||| |||||||||||||| |||||||||||||    
T  20094979 cacctatccaatgtctctcatatccttccctatataaggagctgaagacttgaagaa 20094923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 23800061 - 23800010
Alignment:
Q  229 attgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagatt 279  Q
    |||||||||| | |||||| |||||||| |||||||||||||||||||||||    
T  23800061 attgtatatcaaatgtaaaaccaaacaatcttttatttgattaagttagatt 23800010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 5075751 - 5075816
Alignment:
Q  217 cttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||||| ||||||| ||  |||||||  ||||||| |||||||||||| ||||||||||||    
T  5075751 cttacacctctgattgtatttcaggtgtaaaatcaaacaatcttttatttgatcaagttagattgt 5075816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 5265178 - 5265126
Alignment:
Q  25 cacctctccaacgtatctcatttccttctctatataaggagctaaagacttga 77  Q
    ||||||| |||||| |||||  |||||  ||||||||||||||||||||||||    
T  5265178 cacctcttcaacgtctctcaaatccttgcctatataaggagctaaagacttga 5265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 27707584 - 27707631
Alignment:
Q  111 cttactctgtcaaattcaaaaaacacata-aacacttaagaatttctta 158  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  27707584 cttactctgtcaaat-caaaaaacgcatagaacacttaagaatttctta 27707631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 28622818 - 28622854
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28622818 gttcatatcttagaaattctagagtcttaaaagtctg 28622854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 281
Target Start/End: Original strand, 6561275 - 6561414
Alignment:
Q  142 cacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctag 241  Q
    |||||||||||||||| | | ||| |||| |||||||||| || ||||||| ||||| ||| ||||||| | |   |||||| ||| |||||||||| ||    
T  6561275 cacttaagaatttcttgctaagtttatatgttagaaattctaa-gtcttaagagtcttactctgttttgtatttatttacacttctgattgtatatcaag 6561373  T
Q  242 tgtaaac-caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||  ||||||| |||||||||||||||||||||||||    
T  6561374 tgtaaaatcaaacaatcttttatttgattaagttagattgt 6561414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 29031789 - 29031694
Alignment:
Q  150 aatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaa 246  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||| ||  ||||||||| |||   |||||||||| |||||||||| |||||||    
T  29031789 aatttcttactaagttcatatcttagaaattctaaagtcttaaaagtttg-ttttgttttgtaattgtttacacctctgattgtatatcaagtgtaa 29031694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 15586320 - 15586259
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagat 278  Q
    |||||||| | |||||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  15586320 ttacacctttgattgtatatcaagtgtaaaatcaaacaaccttttatttgattaagttagat 15586259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 17291368 - 17291327
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  17291368 aacacttaagaatttcttactaagttcatatcttagaaattc 17291327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 11130561 - 11130525
Alignment:
Q  245 aaaccaaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  11130561 aaaccaaacaatcttttatttgattaagttagcttgt 11130525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 21946555 - 21946587
Alignment:
Q  249 caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||| |||||||||||||||||||||||||    
T  21946555 caaacaatcttttatttgattaagttagattgt 21946587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 7154 - 7240
Alignment:
Q  112 ttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtct 198  Q
    ||||||||||||||| ||||| | |||||||||||||||| |||||| ||  ||  |||||||||||||| |||||||||| |||||    
T  7154 ttactctgtcaaatttaaaaatcgcataaacacttaagaagttcttagcaatttactatcttagaaattctaaagtcttaagagtct 7240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 23959260 - 23959186
Alignment:
Q  106 gtgctcttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 180  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||| | ||| ||||||||||||||    
T  23959260 gtgctcttactctctcaaatt-aaaaaacacatagaacacttgagaatttcttactaagtttatatcttagaaatt 23959186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 27760766 - 27760835
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagattgtcaaaa 286  Q
    |||||||||| |||||||||| |||||||| |||||||| ||||||| |||||| |||||||||| ||||    
T  27760766 ttacacctcttattgtatatcaagtgtaaaaccaaacaatcttttatatgattaggttagattgtgaaaa 27760835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 19878268 - 19878398
Alignment:
Q  54 ctatataaggagctaaagacttgaagaaata--ataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaacacata-aacacttaa 148  Q
    |||||||||||||| ||||||||||||||||  | ||||||  ||| |||| |   |||| |||||||||||||||||||||  | |||| |||||||||    
T  19878268 ctatataaggagctgaagacttgaagaaatacaaaaagactctgcaattttaatt-gtgcccttactctgtcaaattcaaaag-cgcatagaacacttaa 19878365  T
Q  149 gaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||| |||| | |||||||||||||| ||||    
T  19878366 gaatttattactaagttcatatcttagatattc 19878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22268504 - 22268457
Alignment:
Q  136 cataaacacttaagaatttcttaccaggttcatatcttagaaattcca 183  Q
    ||||||||||||||| |||||||  | |||||||||||||||||||||    
T  22268504 cataaacacttaagagtttcttattaagttcatatcttagaaattcca 22268457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 18038269 - 18038227
Alignment:
Q  23 ggcacctctccaacgtatctcatttccttctctatataaggag 65  Q
    |||||||||||||||| |||||| ||||||| |||||||||||    
T  18038269 ggcacctctccaacgtctctcatatccttctttatataaggag 18038227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 24109670 - 24109720
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttga 267  Q
    |||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  24109670 ttacacctttgattgtatatcaagtgtaaaaccaaacaaacttttatttga 24109720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 24109859 - 24109929
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgtcaaaat 287  Q
    |||||||||| |||||||||| ||||||||   ||||||  |||||| ||||||||||||||||| |||||    
T  24109859 ttacacctctgattgtatatcaagtgtaaaattaaacaatattttatatgattaagttagattgttaaaat 24109929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 26704281 - 26704219
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagatt 279  Q
    |||||| ||| |||||||||| ||| |||| ||||||||  ||||||||||||||||||||||    
T  26704281 ttacacatctgattgtatatcaagtttaaaaccaaacaatattttatttgattaagttagatt 26704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 22268390 - 22268358
Alignment:
Q  249 caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||| |||||||||||||||||||||||||    
T  22268390 caaacaatcttttatttgattaagttagattgt 22268358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 17338360 - 17338405
Alignment:
Q  136 cataaacacttaagaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  17338360 cataaacacttaagaatttcttactaagttcatatcttagaaattc 17338405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 20689928 - 20689844
Alignment:
Q  112 ttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtc 197  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||| || ||| |||| |||||||| | |||||| ||| ||||    
T  20689928 ttactctgtcaaattcaaaaa-cgcataaacacttaagaattttttaacaagttgatatattagaaatactaaagtcataagagtc 20689844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 12860078 - 12860148
Alignment:
Q  111 cttactctgtcaaattcaaaaaacacat-aaacacttaagaatttcttaccaggttcatatcttagaaattc 181  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||||||| | |||||||||||| ||||||    
T  12860078 cttactctgtcaaattcaaaag-cgcattaaacacttaagaatttcttactaagttcatatcttataaattc 12860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 25936508 - 25936614
Alignment:
Q  140 aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatct 239  Q
    ||||| |||||||||||||  | ||||||||||||||||||||  |||||||| ||| | | ||  ||||| |||  ||||||||||| ||||||||||     
T  25936508 aacacctaagaatttcttattaagttcatatcttagaaattcc-gagtcttaagagtgttatttcattttgtaattgcttacacctctgattgtatatca 25936606  T
Q  240 agtgtaaa 247  Q
    ||||||||    
T  25936607 agtgtaaa 25936614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 25936396 - 25936454
Alignment:
Q  23 ggcacctctccaacgtatctcatttccttctctatataaggagctaaagacttgaagaa 81  Q
    |||||||||||||||| |||||  |||||  |||||||||||||| |||||||||||||    
T  25936396 ggcacctctccaacgtctctcaaatccttgcctatataaggagctgaagacttgaagaa 25936454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 20689840 - 20689776
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 281  Q
    |||||||| | |||||||||| ||||||||  ||||||| |||||||||||||||||| ||||||    
T  20689840 ttacacctatgattgtatatcaagtgtaaaatcaaacaatcttttatttgattaagtttgattgt 20689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 36740719 - 36740773
Alignment:
Q  229 attgtatatctagtgtaaa--ccaaacaaacttttatttgattaagttagattgt 281  Q
    |||||||||| ||||||||  |||||||| ||||||||||| |||||||||||||    
T  36740719 attgtatatcaagtgtaaaacccaaacaatcttttatttgactaagttagattgt 36740773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 19642349 - 19642447
Alignment:
Q  184 aagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 281  Q
    ||||||||| ||| ||||| | ||||| |||   |||||||| | |||||| ||| ||||||||  |||| || |||||||||||||||||||||||||    
T  19642349 aagtcttaagagtatgactctattttgtaattgattacacctttgattgtaaatcaagtgtaaaatcaaataatcttttatttgattaagttagattgt 19642447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 22185687 - 22185628
Alignment:
Q  222 acctctaattgtatatctagtgtaaac--caaacaaacttttatttgattaagttagatt 279  Q
    |||||| |||||||||| ||||||||   | ||||| |||||||||||||||||||||||    
T  22185687 acctctgattgtatatcaagtgtaaaaatctaacaatcttttatttgattaagttagatt 22185628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 8195 - 8256
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaa--ccaaacaaacttttatttgattaagttaga 277  Q
    |||||||||| |||||||||| ||||||||  |||||||| |||||||||||||| ||||||    
T  8195 ttacacctcttattgtatatcaagtgtaaaagccaaacaatcttttatttgattaggttaga 8256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 633 - 697
Alignment:
Q  106 gtgctcttactctgtcaaattcaaaaaa-cacataaacacttaagaatttcttaccaggttcata 169  Q
    |||| |||||||||||||||||||||   || | ||||||||||||||||||||||| |||||||    
T  633 gtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcata 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 135811 - 135747
Alignment:
Q  218 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgt 281  Q
    |||||||||| |||||||||| |||||||| | ||| || ||||||||||||||||||| |||||    
T  135811 ttacacctctgattgtatatcaagtgtaaaactaaataatcttttatttgattaagttaaattgt 135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 14820 - 14784
Alignment:
Q  163 gttcatatcttagaaattccaaagtcttaaaagtctg 199  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  14820 gttcatatcttagaaattctaaagtcttaagagtctg 14784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University