View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13174_high_5 (Length: 426)
Name: NF13174_high_5
Description: NF13174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13174_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 11664288 - 11664688
Alignment:
| Q |
12 |
atgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaaagagta |
111 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664288 |
atgaagtaaatggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaaagagta |
11664387 |
T |
|
| Q |
112 |
tgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664388 |
tgaaacctcaagcttgttctctccagattgttctgtggcacgtttcattgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctc |
11664487 |
T |
|
| Q |
212 |
cctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664488 |
cctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaa |
11664587 |
T |
|
| Q |
312 |
aatatttataattttattgataagaataaag---tatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatgtctctt |
408 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11664588 |
aaaatttataattttattgataagaataaagtaatatcaaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatgtctctt |
11664687 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
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| |
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| T |
11664688 |
t |
11664688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 410
Target Start/End: Complemental strand, 7344208 - 7343810
Alignment:
| Q |
12 |
atgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaaagagta |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||| |
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| T |
7344208 |
atgaagtgagtggcgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggagcaagaatgccaataatgggcggtgcaaaagagta |
7344109 |
T |
|
| Q |
112 |
tgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctc |
211 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
7344108 |
tgaaacgtcaagcttgttctctccagattgttctgtagcacgtttcattggaaacactggattaaacaaagatattggaactatggagaatttggccctc |
7344009 |
T |
|
| Q |
212 |
cctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatactt-caatatga |
310 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || ||||||||| | ||| || |
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| T |
7344008 |
cctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttcccata-ga |
7343910 |
T |
|
| Q |
311 |
aaatatttataattttattgataagaataaagtatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgtctcttt |
409 |
Q |
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||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
7343909 |
aaa-aattataattttattaataagaataaagtatcaaatcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgtctcttt |
7343811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 11655831 - 11656091
Alignment:
| Q |
12 |
atgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaaagagta |
111 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11655831 |
atgaagtaagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggagcaaaaatgccaataatgggaggtggaaaagagta |
11655930 |
T |
|
| Q |
112 |
tgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctc |
211 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| || || ||||| ||| || | ||||| ||||| |||||| || |||||||||||| ||| |
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| T |
11655931 |
tgaaacaacaagcttgttctccccagattgttcggtagctcgttttgttggtaatgacggattcaacaatgatattgcgatggtggagaatttgagtctc |
11656030 |
T |
|
| Q |
212 |
cctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt |
272 |
Q |
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|||||| |||| || ||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
11656031 |
cctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataatttt |
11656091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 11669599 - 11669858
Alignment:
| Q |
12 |
atgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaaagagta |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
11669599 |
atgaagtaagtggtgtgttgggccaaacatataaatctaactatgtgagtcgtgtgaacattggagcgaaaatgccaataatgggaggtggaaaagagta |
11669698 |
T |
|
| Q |
112 |
tgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctc |
211 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| || || ||||| ||| || | ||||| ||||| |||||| || ||||| || | ||| |
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| T |
11669699 |
tgaaacaacaagcttgttctccccagattgttccgtagctcgttttgttggtaatgacggattcaacaatgatattgcgatggtggaagatcttatgctc |
11669798 |
T |
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| Q |
212 |
cctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
271 |
Q |
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|||||| |||| ||||||||||| ||||||||||||||||||| |||| ||||||||| |
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|
| T |
11669799 |
cctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt |
11669858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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