View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13174_high_8 (Length: 323)
Name: NF13174_high_8
Description: NF13174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13174_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 39224871 - 39224655
Alignment:
| Q |
19 |
atttcaagtgtaatgagtgagtcatcaaggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgcatgtatgtgttcatgttgg |
118 |
Q |
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| T |
39224871 |
atttcaagtgtaatgagtgagtcatcaaggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgtatctatgtgttcatgttgg |
39224772 |
T |
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| Q |
119 |
ctaggtgttaatttttcctaactagctagtttgtgttatttgaaaattttgaagattttgtttaactatttattagctagagttggacctgttcnnnnnn |
218 |
Q |
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| T |
39224771 |
ctaggtgttaa-ttttcctaactagctagtttgtgttatttgagaattttgaagattttgtttaactatttattagctagagttggacctgttcaaaaaa |
39224673 |
T |
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| Q |
219 |
ntaaaactatagttggta |
236 |
Q |
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||||||||||||||||| |
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| T |
39224672 |
ataaaactatagttggta |
39224655 |
T |
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