View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13174_low_7 (Length: 337)
Name: NF13174_low_7
Description: NF13174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13174_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 14458825 - 14459143
Alignment:
| Q |
15 |
acaataaaatctgaaatgtttaattaataaagaatagcttgttctgtaacttgtgatgttattcctacttatattgttgaaagttgaaactattattgag |
114 |
Q |
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| T |
14458825 |
acaataaaatctgaaatgtttaattaataaagaatagcttgttctcaaacttgtgatgttattcctacttatattgttgaaagttgaaactattattgag |
14458924 |
T |
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| Q |
115 |
aaatgttatgacataagtttgttccgtgtnnnnnnnnnnntagtcaagttcatagagaaaacttattatttgcagtgtaaattccgaaatcaaaatgtaa |
214 |
Q |
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| T |
14458925 |
aaatgttatgacataagtttgttccgtgtaaaaaaaaaaatagtcaagttcatagtgaaaacttattatctgcagtgtaaattccgaaatcaaaatgtaa |
14459024 |
T |
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| Q |
215 |
attccgaaattctattcatgtggattaatcattgcagtgttagttgatgattaaatgtgatgcaaatgcagtaaataagaggaatgcgcacaaatgaata |
314 |
Q |
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| T |
14459025 |
attccgaaattctattcatgtggattaatctttgcagtgttagctgttgatgaaatgtgatgcaaatgcagtaaataagaggaatg-gcacaaatgaata |
14459123 |
T |
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| Q |
315 |
gaaatgtcggtctattattg |
334 |
Q |
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| T |
14459124 |
taaatgtcggtgtattattg |
14459143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 14462318 - 14462360
Alignment:
| Q |
97 |
gttgaaactattattgagaaatgttatgacataagtttgttcc |
139 |
Q |
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| T |
14462318 |
gttgaaattattattgagaaatgatatgacataagtttgttcc |
14462360 |
T |
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