View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13175_high_3 (Length: 406)
Name: NF13175_high_3
Description: NF13175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13175_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 156 - 397
Target Start/End: Original strand, 32927005 - 32927244
Alignment:
| Q |
156 |
tcgaggacaaattgtt-acttttttactactatgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
254 |
Q |
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| T |
32927005 |
tcgaggacaaattgttcactttttcacta---tgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
32927101 |
T |
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| Q |
255 |
cagttcattcacgttttcagtaaatggaagcaaagagttcaatcnnnnnnnaaccaaattaagcacagaaaattccaaaaacacatgaataataagataa |
354 |
Q |
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| T |
32927102 |
cagttcattcacgtttgcagtaaatggaagcaaagagttcaatctttttttaaccaaatgaagcacagaaaattccaaaaacacatgaataataagataa |
32927201 |
T |
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| Q |
355 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
397 |
Q |
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| T |
32927202 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
32927244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 32926811 - 32926966
Alignment:
| Q |
4 |
aatttgattgtatttggtaaagatgcgtctctagcacaaagcttcaaattacgtcaaaatagagaatgtattccgcatatatataaacggtgtgatgtgg |
103 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
32926811 |
aatttgattgtatttggtaaagatgcgtctctaggacaaagcttcaaattacatcaaaatagagaatgtattccatatataaacggccggtgtgatgtgg |
32926910 |
T |
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| Q |
104 |
taaaataaagaaaagtgaagatcaaatttaatacttcacaatttttaataggtcga |
159 |
Q |
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| T |
32926911 |
taaaataaagaagagtgaagatcaaatttaatccttcataatttttaataggtcga |
32926966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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