View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13175_low_1 (Length: 1561)
Name: NF13175_low_1
Description: NF13175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13175_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 2786431 - 2786927
Alignment:
| Q |
1 |
atggattcattcttcttgggaacatatattggtctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattctttt |
100 |
Q |
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| T |
2786431 |
atggattcattcttcttgggaacatatattggtctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattctttt |
2786530 |
T |
|
| Q |
101 |
gattagggctttcactttgagacggggagaacatcatcaaagcttcagcaagcccttcagcgacagcggtgtcattaaaaccaccaccggaaaaggatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2786531 |
gattagggctttcactttgagacggggagaacatcatcaaagcttcagcaagcccttcagcgacagcggtgtcatttaaaccaccaccggaaaaggatat |
2786630 |
T |
|
| Q |
201 |
agatgataaccaatctaagaaaacttctggatctcttgtccagccagaacgttgcacgagaacaggagcataaatgccatgagtatgataggtgactagg |
300 |
Q |
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| T |
2786631 |
agatgataaccaatctaagaaaacttctggatctcttgtccagccagaacgttgcacgagaacaggagaataaatgccatgagtatgataggtgactagg |
2786730 |
T |
|
| Q |
301 |
gcaaactgagagttggaaacagcaggttcgttcccacaaagggacttggcgattttgttgagataatccacttgaagagtatcccagtgcggtcccatcg |
400 |
Q |
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| T |
2786731 |
gcaaactgagcgttggaaacagcaggttcgttcccacaaagggacttgacgattttgttgagataatccacttgaagagtatcccagtgcggtcccatcg |
2786830 |
T |
|
| Q |
401 |
cagcggtgccttcgacgacaacgatgaccttcttctcggccatggtgttgaaagtttgaaacaagaacgcaaaaacaaaagagagtgagtgcacaca |
497 |
Q |
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| T |
2786831 |
cagcggtgctttcgacgacaacgatgaccttcttctccgccatggtgttgaaagtttgaaacaagagcgcaaaaacaaaagagagtgagtgcacaca |
2786927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 568 - 1086
Target Start/End: Original strand, 2786998 - 2787519
Alignment:
| Q |
568 |
tcttttaatttttaaaaagggtgacgctacttgtagcgaatcaaaatatcacgatagcatcgccacatgtattccattaattctttaccgttgaaacaat |
667 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |
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| T |
2786998 |
tcttttaatttttaaaatgggtgacgctacttgtagcgaaccaaaatatcacgatagcatcaccacgtgtattccattaattctttaccgttgaaacgat |
2787097 |
T |
|
| Q |
668 |
aacatcgccaatagcgaaccaaaatatcatgatagcattgccacgtatattccatcaattctttaccgttgaaacgataacatcgccaactgtattccac |
767 |
Q |
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| T |
2787098 |
aacatcgccaatagcgaaccaaaatatcatgatagcatcgccacgtgtattccatcaattctttaccgttgaaacgataacatcgccaactgtattccac |
2787197 |
T |
|
| Q |
768 |
caagtctttagtgttgacttccgtcacttttcaacaaacaattcatgaattccgcaaactctatcttttcattggtttataaatctcttttgtgatcctt |
867 |
Q |
| |
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| T |
2787198 |
caagtctttagtgttgacttccgtcacttttcaacaaacaattcatgaattccgcaaactctatcttttcattggtttataaatctcttttgtgatcctt |
2787297 |
T |
|
| Q |
868 |
tttgttataatttctttcgcatgatataa----cgatattgtttaaaaaatttgtgggtttttattgactc-gtgagagattttaagagaatttgttaaa |
962 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2787298 |
tttgttataatttctttcgcatgatatatatagcgatattgtttaaaaaatttgtgggtttttattgactcagtgagagattttaagagaatttgttaaa |
2787397 |
T |
|
| Q |
963 |
atgannnnnnnnacaattaagattcttaacacacgattttaatgtatatatnnnnnnnnnttaaaagagtgaaggctcatttcagtccccgacaaaatgt |
1062 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |
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| T |
2787398 |
atgattttttttacaattaagattcttaacacacgattttaatgtatata--aaagatttttaaaagagtgaaggctcattttggtctccgacaaaatgt |
2787495 |
T |
|
| Q |
1063 |
gcataggccaaactagcgttagac |
1086 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2787496 |
gcataggccaaactagcgttagac |
2787519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-89
Query Start/End: Original strand, 1232 - 1493
Target Start/End: Original strand, 2787655 - 2787918
Alignment:
| Q |
1232 |
gataagggacagttaagtctctacaaannnnnnnngggatgatttggtccctataaaaatttaattaaaactgaaattagtcannnnnnnn--ctccatg |
1329 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2787655 |
gataagggacagttaagtctctacaaaatttttttgggatgatttggtccctataaaaatttaattaaaactgaaattagtcattttttttttctccatg |
2787754 |
T |
|
| Q |
1330 |
ataaaaatgcaatttgttaaattttatgaaactaaattgattcnnnnnnngtcggtctacttctttggtcgaaacaaccatcgtcatcactgacactgat |
1429 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||| |
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| T |
2787755 |
acaaaaatgcaatttgttaaattttatgaaactaaattgattctttttttgtcggtctacttctttggtcaaaacaaccatcgtcatcattgaaactgat |
2787854 |
T |
|
| Q |
1430 |
actcacaaaaaatgggaaatagaagggtgtgtgaggaaatgtaagaagaaaaccgaaatataag |
1493 |
Q |
| |
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| T |
2787855 |
actcacaaaaaatgggaaatagaagggtgtgtgaggaaatgtaagaagaaaaccgaaatataag |
2787918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1136 - 1225
Target Start/End: Original strand, 2787537 - 2787626
Alignment:
| Q |
1136 |
ttagtcattccgtcaatttttgtcttcaaccaacaattttcttcctatttttgaaccttgtctgggaatatatgacaatacagtcgtctt |
1225 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
2787537 |
ttagtcattccgtcaattttcgtcttcaaccaacaattttcttcctatttttgaaccgtgactgggaatatatgacaatacagtcgtctt |
2787626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 22516096 - 22515971
Alignment:
| Q |
135 |
catcaaagcttcagcaagcccttcagcgacagcggtgtcattaaaaccaccaccggaaaaggatatagatgataaccaatctaagaaaacttctggatct |
234 |
Q |
| |
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||||| ||||||||||||||||||||| | ||| | |||||||||||||||||| ||||| | ||||||| || ||| | ||||||||| ||||| ||| |
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| T |
22516096 |
catcagagcttcagcaagcccttcagcaatagctgcgtcattaaaaccaccaccagaaaatggtatagattctagccactgtaagaaaacatctgggtct |
22515997 |
T |
|
| Q |
235 |
cttgtccagccagaacgttgcacgag |
260 |
Q |
| |
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||||||||||||| |||||||||||| |
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| T |
22515996 |
cttgtccagccagtacgttgcacgag |
22515971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 22517262 - 22517146
Alignment:
| Q |
19 |
ggaacatatattggtctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcacttt |
118 |
Q |
| |
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|||||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||||||||| | |||| ||||||| ||||| ||| | |||||| |
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| T |
22517262 |
ggaacatataccggtgtctgcaatgggtaaggattactggctgccacaaggatacagtgcatgttcgtatccacattctgctgatttaggcctccacttt |
22517163 |
T |
|
| Q |
119 |
gagacggggagaacatc |
135 |
Q |
| |
|
|||| |||| ||||||| |
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|
| T |
22517162 |
gagaaggggggaacatc |
22517146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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