View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13176_high_1 (Length: 649)
Name: NF13176_high_1
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 44531962 - 44531347
Alignment:
| Q |
19 |
cacgctgggaacggtgagtatctaatggaactatccattggaacaccaccaatttcttacccagcagttttggatacaggaagtgacctcatatggactc |
118 |
Q |
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| T |
44531962 |
cacgccggaaacggtgagtatctaatggaactatccattggaacaccaccaatttcttacccagcagttttggatacaggaagtgacctcatatggactc |
44531863 |
T |
|
| Q |
119 |
aatgtgaaccttgttcacaatgttacaaacaaccaacaccaatttttgatccnnnnnnntcctcaaccttttctaaactctcatgtagtagcaacctatg |
218 |
Q |
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| T |
44531862 |
aatgtgaaccttgttcacaatgttacaaacaaccaacaccaatttttgatccaaaaaaatcctcaaccttttctaaactctcatgtagtagcaacctatg |
44531763 |
T |
|
| Q |
219 |
caatgctttaccttctccaacttgcagcaacaatggttgcaattatgtttattcatatggtgattattctatgacacaaggtattttaggtagtgaaaca |
318 |
Q |
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| T |
44531762 |
caatgctttaccttctccaacttgcagcaacaatggttgcaattatgtttattcatatggtgattattctatgacacaaggtattttaggtagtgaaaca |
44531663 |
T |
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| Q |
319 |
ttcacttttggtgatgatnnnnnnnnccaagtttcagttaaaaacattggttttggttgtggtgaagacaatgaaggaaaagggtttgaacaagcttcag |
418 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531662 |
ttcacttttggtgatgataaaaaaaaccaagtttcagttaaaaacattggttttggttgtggtgaagacaatgaaggaaaagggtttgaacaagcttcag |
44531563 |
T |
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| Q |
419 |
ggttggttggattaggacgtggacctttatctttggtttctcaattaaaagaacaaaaattctcttattgtttaacctcaatggatgacacaaaacaaag |
518 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531562 |
ggttggttggattaggacgtggtcctttatctttggtttctcaattacaagaacaagaattctcttattgtttaacctcaatggatgacacaaaacaaag |
44531463 |
T |
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| Q |
519 |
tgttcttttgttaggttctcttccaaatgttaatgccacaaaacaggtaacaacaccacttatcacaaatccattgcaaccatctttttattatatttca |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531462 |
tgttcttttgttaggttctcttccaaatgttaatgccacaaaacaggtaacaacaccacttatcacaaatccattgcaaccatctttttattatatttca |
44531363 |
T |
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| Q |
619 |
cttgaaggtatctctg |
634 |
Q |
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|||||||||||||||| |
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| T |
44531362 |
cttgaaggtatctctg |
44531347 |
T |
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