View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13176_high_8 (Length: 248)
Name: NF13176_high_8
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 42193170 - 42192940
Alignment:
| Q |
1 |
tcatttcctatcattatagctaacgtatatatgtataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattcaaaaacacagtctctct |
100 |
Q |
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| T |
42193170 |
tcatttcctatcattatagctaacgtatatatgtataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattcaaaaacacagtctctct |
42193071 |
T |
|
| Q |
101 |
atttgtcacactatttttaacatggcagcagagttctaaacaaagggcctcagcttcctcgataagcttaacacctatttgttttcacgtccaacttcta |
200 |
Q |
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| T |
42193070 |
ttttgtcac--tatttttaacacggcagcagagttctaaactaagggcctcagcttcctcgataagcttaacacctctttgttttcacgtccaacttcta |
42192973 |
T |
|
| Q |
201 |
gtcaatgtgtgtccaccttgaatctacaaggtg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42192972 |
gtcaatgtgtgtccaccttgaatctacaaggtg |
42192940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 3561814 - 3561972
Alignment:
| Q |
28 |
tatatgtataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattcaaaaacacagtctctctatttgtcacactatttttaacatggca |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||| |
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| T |
3561814 |
tatatgtataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattcgaaaa-acag--tctctatttttcacactatttttaacatggca |
3561910 |
T |
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| Q |
128 |
gcagagtt-ctaaacaaagggcctcagcttcctcgataagcttaacacctatttgttttcac |
188 |
Q |
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| T |
3561911 |
gcagagttcctaatctaagagactcagcttcctcgataagcttagcccctgtttgttttcac |
3561972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 35707576 - 35707623
Alignment:
| Q |
37 |
aaattaagcaagcatgttgttgggtgctatgcaattcaagcacattca |
84 |
Q |
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| T |
35707576 |
aaattaagcaagcatgttgttgagtgctatgcaattcaagcacattca |
35707623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 8171203 - 8171153
Alignment:
| Q |
34 |
tataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattca |
84 |
Q |
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||||||||||||||||||||| |||||||||| |||| |||||| |||||| |
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| T |
8171203 |
tataaattaagcaagcatgttattgggtgctaagcaactcaagcgcattca |
8171153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 34175647 - 34175697
Alignment:
| Q |
34 |
tataaattaagcaagcatgttgttgggtgctatgcaattcaagcacattca |
84 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34175647 |
tataaatcaagcaagcatgttgttgagtgctatgcaattcaagcacattca |
34175697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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