View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13176_low_2 (Length: 434)
Name: NF13176_low_2
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 37595745 - 37596143
Alignment:
| Q |
18 |
tgaagtctctacaacatcaaaaggtttggagcgaaattgaaccacaatttaaagccatgctacatatataatgtagatgnnnnnnntgaaatttgctcta |
117 |
Q |
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| T |
37595745 |
tgaagtctctacaacatcaaaaggtttggagcgaaattgaaccacaatttaaagccatgctacatatataatgtagatgaaaaaaatgaaatttgctcta |
37595844 |
T |
|
| Q |
118 |
tatttgacctagtgtagtagaaaatgtgaatttaacaaacctgaaaaacattatgtgtagatgttttctgaagttcccttggttcaatagcttgataact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595845 |
tatttgacctagtgtagtagaaaatgtgaatttaacaaacctgaaaaacattatgtgtagatgttttctgaagttcccttggttcaatagcttgataact |
37595944 |
T |
|
| Q |
218 |
ttgattcttctctctaacaatgatcttttggacaggattggacataggagactcaacaagtttggagtatttggaaaaattgatgagccttgtatcatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595945 |
ttgattcttctctctaacaatgatcttttggacaggattggacataggagactcaacaagtttggagtatttggaaaaattgatgagccttgtatcatca |
37596044 |
T |
|
| Q |
318 |
agaaaaacactcttttcaatcctcttaggtacaacaacagaatgattagaatcacgtatactcatacacactgctgttgatgattgagagtggcacatg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596045 |
agaaaaacactcttttcaatcctcttaggtacaacaacagaatgattagaatcacgtatactcatacacactgctgttgatgattgagagtggcacatg |
37596143 |
T |
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