View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13176_low_3 (Length: 405)
Name: NF13176_low_3
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 30719745 - 30720137
Alignment:
| Q |
16 |
acatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
115 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
30719745 |
acatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttga |
30719844 |
T |
|
| Q |
116 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719845 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
30719944 |
T |
|
| Q |
216 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa------------- |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719945 |
cgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaa |
30720044 |
T |
|
| Q |
303 |
------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
393 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30720045 |
attaactagagtttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30720137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 30881614 - 30881222
Alignment:
| Q |
16 |
acatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
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|
| T |
30881614 |
acatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttga |
30881515 |
T |
|
| Q |
116 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881514 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
30881415 |
T |
|
| Q |
216 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa------------- |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881414 |
cgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaa |
30881315 |
T |
|
| Q |
303 |
------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
393 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30881314 |
attaactagaatttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30881222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 60 - 393
Target Start/End: Complemental strand, 30892653 - 30892305
Alignment:
| Q |
60 |
atttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
159 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892653 |
atttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
30892554 |
T |
|
| Q |
160 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattcctt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30892553 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattcctt |
30892454 |
T |
|
| Q |
260 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |
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|
| T |
30892453 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattcaatatttgatca----cat |
30892358 |
T |
|
| Q |
341 |
agtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
393 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30892357 |
agtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30892305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 44731181 - 44731464
Alignment:
| Q |
16 |
acatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | | |
|
|
| T |
44731181 |
acatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtactaa |
44731280 |
T |
|
| Q |
116 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
44731281 |
gtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgttc |
44731380 |
T |
|
| Q |
216 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
44731381 |
cgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 16867568 - 16867854
Alignment:
| Q |
16 |
acatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || | |
|
|
| T |
16867568 |
acatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtattta |
16867667 |
T |
|
| Q |
116 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |
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|
| T |
16867668 |
gtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgttc |
16867767 |
T |
|
| Q |
216 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
302 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16867768 |
tgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 8899230 - 8898943
Alignment:
| Q |
15 |
aacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttg |
114 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
8899230 |
aacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttg |
8899131 |
T |
|
| Q |
115 |
agtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899130 |
agtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgtt |
8899031 |
T |
|
| Q |
215 |
ccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
302 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8899030 |
ctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 68 - 302
Target Start/End: Complemental strand, 31727335 - 31727101
Alignment:
| Q |
68 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctc |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
168 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgcc |
267 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| |
|
|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgat |
31727136 |
T |
|
| Q |
268 |
gcaacagcagaaaatgcccaacaacatcctacaaa |
302 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31727135 |
gcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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