View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13176_low_4 (Length: 380)
Name: NF13176_low_4
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 48727616 - 48727263
Alignment:
| Q |
10 |
attatactcaagaatggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaaca |
109 |
Q |
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| T |
48727616 |
attatactcaagaatggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgagcaaatcctctagccaatctaaattttcctcttccaccaaca |
48727517 |
T |
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| Q |
110 |
acagccaattcacgaattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcataca |
209 |
Q |
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| T |
48727516 |
acagccaattcacgaattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcataca |
48727417 |
T |
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| Q |
210 |
taacaatcgttaaattttcactttgacttgaagacagataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctcccttaagggatc |
309 |
Q |
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| T |
48727416 |
taacaatcgttaaattttcactttgacttgaagacaaataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctctcttaagggatc |
48727317 |
T |
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| Q |
310 |
atcgattgcatacacgtggccaaatggggttgcttttggtccaacagtgatgtt |
363 |
Q |
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| T |
48727316 |
atcgattgcatacacatggccaaatggggttgcttttggtccaacagtgatgtt |
48727263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 48724758 - 48724428
Alignment:
| Q |
13 |
atactcaagaatggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaacaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
48724758 |
atactcaagaatggcatcaccatttttgtaattaagagaatgagtcttaacttgaacaaatcctctagcaaatctaaatttatctcttccaccaacaaca |
48724659 |
T |
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| Q |
113 |
gccaattcacgaattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcatacataa |
212 |
Q |
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| T |
48724658 |
gccaattcacgatttgtttcagtaataggattcctcgaaaacacactaattgaactccctttgaatttccctgtggtgaaaccaaaatcagcgtacaaaa |
48724559 |
T |
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| Q |
213 |
caatcgttaaattttcactttgacttgaagacagataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctcccttaagggatcatc |
312 |
Q |
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| T |
48724558 |
caagtgaaagattttcactttgactcgaagataaataaagaccttgtgcatttccaatcactttagaacttttatttggtccctctcttaaaggatcatc |
48724459 |
T |
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| Q |
313 |
gattgcatacacgtggccaaatggggttgct |
343 |
Q |
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| T |
48724458 |
aattgcatacacatggccaaatggtgttgct |
48724428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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