View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13176_low_6 (Length: 350)
Name: NF13176_low_6
Description: NF13176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13176_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 48412077 - 48411763
Alignment:
| Q |
14 |
agaccaggagtttaaccataatgctctcttcaagaaaaggtaannnnnnnnnnattaaatagttagaccatcaagtattcattcataatgatgtctttga |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48412077 |
agaccaggagtttaaccacaatgctctcttcaagaaaaggtaatattttgtttattaaatagttagaccatcaagtattcat----aatgatgtctttga |
48411982 |
T |
|
| Q |
114 |
actcttaattttgcttnnnnnnntgacaattgtagtaatacggagagaatgttgttttgtttctttcatgtgtatgaattgtcaaggccctagcttgaac |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411981 |
actcttaattttgcttaaaaaaatgacaattgtagtaatacggagagaatgttgttttgtttctttcatgtgtatgaattgtcaaggccctagcttgaac |
48411882 |
T |
|
| Q |
214 |
ttatttcaatatgtaatcatttgaatttgtggtgcagaaagagcatgcctaaatggaaggagcaagtgaagatttgcacaaacacaggattatctgaagg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411881 |
ttatttcaatatgtaatcatttgaatttgtggtgcagaaagagcatgcctaaatggaaggagcaagtgaagatttgcacaaacacaggattatctgaagg |
48411782 |
T |
|
| Q |
314 |
gtctttggatgatgaatat |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48411781 |
gtctttggatgatgaatat |
48411763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University