View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13177_high_1 (Length: 949)
Name: NF13177_high_1
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_1 |
 | |
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| [»] scaffold0347 (1 HSPs) |
| | |
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| [»] scaffold0300 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0423 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 560 - 945
Target Start/End: Original strand, 16760044 - 16760431
Alignment:
| Q |
560 |
cattgttcaacgtgcgcgactctatttccaaaattgttttcgatctcgatcgcgccaaaataatccctaacacttaaaccgtttttaccctactatttaa |
659 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| |||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||| | |
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|
| T |
16760044 |
cattgttcgtcgtgcgcgactccgtttttaaaaccgttttcgatctcgatcgcgccaaaataatctcaatcacttaaaccgtttaaaccctactattcat |
16760143 |
T |
|
| Q |
660 |
cctcattattgttcgaaaacatttcaattcaacttagctcaaaacaacttatttcagataatcacttaaaaa-gac-tttatcttaaaaactcg-tttta |
756 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||| |||| |
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|
| T |
16760144 |
tctcattcttactcaaaaacatttcaattcaacttagctcaaaacaacttatttcacgtaatcacttaaaaacgacttttaacttaaaaactcgtttttt |
16760243 |
T |
|
| Q |
757 |
cccaaattcgatttcacacccaagactcacaaccaaaacagaatttcatactcattactcctcattaacaacttccccaacataatcataaatctaaatt |
856 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||| || |||| |
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|
| T |
16760244 |
ccgaaattcaatttcacacccaagactcacaaccaaaacaaaatttcatactcattactcctcattaacaactttaccaataaaatcataaagctcaatt |
16760343 |
T |
|
| Q |
857 |
catcaaaatatcatttcatgattcatcactcattgattac-aacattcacgaacaaaccacaatttaatccaaacatcacatttaacata |
945 |
Q |
| |
|
||||||| | |||||||| |||| |||| |||| | || || |||||| ||| |||||| | |||| | ||||||||||||||||||| |
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|
| T |
16760344 |
catcaaact-tcatttcacgattaatcatccatttctcacaaaaattcaccaac-aaccacgacttaacctaaacatcacatttaacata |
16760431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 330 - 447
Target Start/End: Original strand, 16757638 - 16757755
Alignment:
| Q |
330 |
caagcttaagtactcaattatacatcaattaatcaagtttaggtgttttggatccattggtatgcttttaaaactgaaaaatgacgaaaaattggacttc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||| ||||||| |
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|
| T |
16757638 |
caagcttaagtactcaattatacatcaattaactaagtttaggtgtttgggattcattggtatgcctttaaaactgaaaaacaacgaaaaatcggacttc |
16757737 |
T |
|
| Q |
430 |
tcgcgcataagacaggtc |
447 |
Q |
| |
|
|||||| |||||||||| |
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| T |
16757738 |
ccgcgcacaagacaggtc |
16757755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 38 - 394
Target Start/End: Complemental strand, 511791 - 511434
Alignment:
| Q |
38 |
ataatcatcgtcaaacacatacttcaacaaataaaccacatcacttcatctagcacaatttacgtttaaagacgattgatcaaatatgt-tagctaattc |
136 |
Q |
| |
|
||||||||| | ||||| |||||||| ||| || |||||||||||| |||||||||| | ||| || |||||| |||| || || |||||||| | |
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|
| T |
511791 |
ataatcatcataaaacatatacttcatcaagtaggtaacatcacttcatttagcacaattagcctttgaa-acgattaatcatttacgtctagctaatcc |
511693 |
T |
|
| Q |
137 |
acatttcaagaatacatatcataaccattctaaccatcaatcatcttcccatcaataacacatagccctattcaagatta-cacaacatgaatcattaat |
235 |
Q |
| |
|
|||||||||| || ||||||||| | | ||| ||||| ||||| | ||||||||| ||| ||| | | ||||| |||| || | ||| ||| ||||| |
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|
| T |
511692 |
acatttcaagtatgcatatcatagctaaattaatcatcattcatcattccatcaatatcacgtagtcattttcaa-attatcatagcatatatcgttaat |
511594 |
T |
|
| Q |
236 |
tctcaaagtccggctatttcctataat-gtcaaagttcgtttgttttctcaaatttacaacatacaatccaattccaatctaaactaagttaaaccaagc |
334 |
Q |
| |
|
| ||||||||| |||||| ||| | | |||||||||||||| ||||| ||| || | ||||| |||||||||||||| |||| ||| |||||||||| | |
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|
| T |
511593 |
ttccaaagtccgtctattttctacatttgtcaaagttcgtttattttcacaatttcaaaacattcaatccaattccaacctaagctaggttaaaccaatc |
511494 |
T |
|
| Q |
335 |
ttaagtactcaattatacatcaattaatcaagtttaggtgttttggatccattggtatgc |
394 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| ||| ||||| |||||| |
|
|
| T |
511493 |
gtaagtactcaattacacctcaattaactaagtttaggtgtttgggacccattcgtatgc |
511434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 240 - 396
Target Start/End: Complemental strand, 5698272 - 5698116
Alignment:
| Q |
240 |
aaagtccggctatttcctataatgtcaaagttcgtttgttttctcaaatttacaacatacaatccaattccaatctaaactaagttaaaccaagcttaag |
339 |
Q |
| |
|
|||||||| ||||||| || |||||| |||||| | | ||||| ||| |||||| || ||||| ||||||||||||||| |||||||| |||| || | |
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|
| T |
5698272 |
aaagtccgtctatttcttaaaatgtccaagttcttctattttcacaattttacaccacacaattcaattccaatctaaagcaagttaaatcaagttttgg |
5698173 |
T |
|
| Q |
340 |
tactcaattatacatcaattaatcaagtttaggtgttttggatccattggtatgctt |
396 |
Q |
| |
|
|||| ||||| ||||||| ||| ||||||||||||| ||| ||| |||||||||| |
|
|
| T |
5698172 |
tacttaattagacatcaactaactaagtttaggtgttcgggacccaatggtatgctt |
5698116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 1273154 - 1273026
Alignment:
| Q |
249 |
ctatttcctataatgtcaaagttcgtttgttttctcaaatttacaacatacaatccaattccaatctaaactaagttaaaccaagcttaagtactcaatt |
348 |
Q |
| |
|
||||||| || ||||||||||||||| | ||||| || | | || |||||||| ||||||||||| ||| |||||||| ||| |||||||||||||| |
|
|
| T |
1273154 |
ctatttcttaaaatgtcaaagttcgtctattttcaaaagtctgcaccatacaattcaattccaatccaaatcaagttaaattaagtttaagtactcaatt |
1273055 |
T |
|
| Q |
349 |
atacatcaattaatcaagtttaggtgttt |
377 |
Q |
| |
|
||||||||||||| ||| |||||||||| |
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|
| T |
1273054 |
atacatcaattaactaagattaggtgttt |
1273026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 853 - 944
Target Start/End: Complemental strand, 1272593 - 1272502
Alignment:
| Q |
853 |
aattcatcaaaatatcatttcatgattcatcactcattgattacaacattcacgaacaaaccacaatttaatccaaacatcacatttaacat |
944 |
Q |
| |
|
||||| |||||| ||||||||||| || ||||||||| | |||| |||||| |||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
1272593 |
aattcgtcaaaacatcatttcatggtttgtcactcatttctcacaaaattcaccaacaaaccacaacttaattcaaacatcaaatttaacat |
1272502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 346
Target Start/End: Original strand, 355734 - 355954
Alignment:
| Q |
127 |
tagctaattcacatttcaagaatacatatcataaccattctaaccatcaatcatcttcccatcaataacacatagccctattcaagatta-cacaacatg |
225 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | | ||| ||||| || || ||||||||||| ||| ||| | | ||||| |||| || | ||| |
|
|
| T |
355734 |
tagctaatccacatttcaagtatacatatcatagcaaaattaatcatcattcgtcatcccatcaatatcacgtagtcattttcaa-attatcatagcata |
355832 |
T |
|
| Q |
226 |
aatcattaattctcaaagtccggctatttcctataat-gtcaaagttcgtttgttttctcaaatttacaacatacaatccaattccaatctaaactaagt |
324 |
Q |
| |
|
||| |||||| ||||||||| |||||| ||| | | |||||||||||||| ||||| ||| || | ||||| |||||||||||||| |||| ||| || |
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|
| T |
355833 |
tatcgttaatttccaaagtccgtctattttctacatttgtcaaagttcgtttattttcacaatttcaaaacattcaatccaattccaacctaagctaggt |
355932 |
T |
|
| Q |
325 |
taaaccaagcttaagtactcaa |
346 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
355933 |
taaaccaattgtaagtactcaa |
355954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 24448 - 24496
Alignment:
| Q |
346 |
attatacatcaattaatcaagtttaggtgttttggatccattggtatgc |
394 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
24448 |
attatacttcaattaatcaagtttaggggtttaggatccatttgtatgc |
24496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 5210813 - 5210875
Alignment:
| Q |
321 |
aagttaaaccaagcttaagtactcaattatacatcaattaatcaagtttaggtgttttggatc |
383 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||||||| || | |||||||||||| ||||| |
|
|
| T |
5210813 |
aagttaaatcaagcttaggtacttaactatacatcaattcattaggtttaggtgtttgggatc |
5210875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 5423 - 5538
Alignment:
| Q |
262 |
tgtcaaagttcgtttgttttctcaaatttacaacatacaatccaattccaatctaaactaagttaaaccaagcttaagtactcaattatacatcaattaa |
361 |
Q |
| |
|
||||||||||||| | ||||| ||| || | ||||| ||||||||||||| |||| ||| | ||||||| | ||||||||||||||||| ||||| || |
|
|
| T |
5423 |
tgtcaaagttcgtctattttcacaatttcaaaacatttaatccaattccaacctaagctagatgaaaccaatcataagtactcaattatacttcaatgaa |
5522 |
T |
|
| Q |
362 |
tcaagtttaggtgttt |
377 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5523 |
gtaagtttaggtgttt |
5538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 675 - 862
Target Start/End: Complemental strand, 13497 - 13308
Alignment:
| Q |
675 |
aaaacatttcaattcaacttagctcaaaacaacttatttcagataatcacttaaaaagac-tttatcttaaaaactcgttttacccaaattcgatttcac |
773 |
Q |
| |
|
|||||||||||| ||||| || | ||||| | |||||||| ||||||||||||| ||| |||| ||||||||| |||||| | | || || || |||| |
|
|
| T |
13497 |
aaaacatttcaactcaacgtatcacaaaatagtttatttcacttaatcacttaaaacgacatttagcttaaaaacccgtttttctccaaatcaatctcac |
13398 |
T |
|
| Q |
774 |
acccaagactcacaaccaaaacagaatttcatactc-attactcctcattaacaacttccccaacataatcataaatctaaattcatcaa |
862 |
Q |
| |
|
|| || | ||||||||||||||||||||| || || ||| | | ||||||||||||| | |||| ||||||| | || |||||||||| |
|
|
| T |
13397 |
acaaaaaattcacaaccaaaacagaatttcttaatctatttcatcacattaacaacttcactaacacaatcatataactcaattcatcaa |
13308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 14797616 - 14797665
Alignment:
| Q |
343 |
tcaattatacatcaattaatcaagtttaggtgttttggatccattggtat |
392 |
Q |
| |
|
||||||||||||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
14797616 |
tcaattatacatcaattcattaggtttaggtgtttgggatccattggtat |
14797665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 911 - 945
Target Start/End: Complemental strand, 366662 - 366628
Alignment:
| Q |
911 |
aaccacaatttaatccaaacatcacatttaacata |
945 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
366662 |
aaccacaacttaatccaaacatcacatttaacata |
366628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0423 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0423
Description:
Target: scaffold0423; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 829
Target Start/End: Complemental strand, 13358 - 13225
Alignment:
| Q |
699 |
caaaacaacttatttcagataatcacttaaaaa-gacttt-atcttaaaaactcgttttaccc-aaattcgatttcacacccaagactcacaaccaaaac |
795 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||| | ||||||||||| |||| ||| |||||| ||||||||||||| || | || ||| | |
|
|
| T |
13358 |
caaaacaacttatttcccgtaatcacttaccaacgacttttaccttaaaaactcatttttccccaaattcaatttcacacccaaaacacttaatcaagat |
13259 |
T |
|
| Q |
796 |
agaatttcatactcattactcctcattaacaact |
829 |
Q |
| |
|
|||| |||||||||||| | || ||||||||||| |
|
|
| T |
13258 |
agaaattcatactcattccaccacattaacaact |
13225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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