View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13177_high_17 (Length: 401)
Name: NF13177_high_17
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 35904781 - 35905135
Alignment:
| Q |
19 |
ctttatataaattaacaattaattacctggtggccaaaacaaacgccaaggatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35904781 |
ctttatataaattaacaattaattacctggtggccaaaacaaacgccaatgatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcac |
35904880 |
T |
|
| Q |
119 |
atatccatttctcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35904881 |
atatccatttctcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatga |
35904980 |
T |
|
| Q |
219 |
aactttgtacatgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35904981 |
aactttgtacatgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctct |
35905080 |
T |
|
| Q |
319 |
gcacataacaacgcaccaaatctcttgcaaccaattttctccattatcaagtagt |
373 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905081 |
gcacataacaacacaccaaatctcttgcaaccaattttctccattatcaagtagt |
35905135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 33618233 - 33618002
Alignment:
| Q |
39 |
aattacctggtggccaaaacaaacgccaaggatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccatttctcatttcca |
138 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| ||| || ||| |||| |||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
33618233 |
aattacccggtggccaaaaccaatgccaaggatttttgtgtgcttgaagtctaattacttaatcaatgtgacaaggtcacatatcaatttcttatttcca |
33618134 |
T |
|
| Q |
139 |
taagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg-----tc |
233 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| || |||||| |||| |||| | |
|
|
| T |
33618133 |
taggcatcactgcaactaccagtgatcacaaacccatcatagagactcaattcatcatccttagaaaactctcaacgtgaaacgttgtgcatgttccatt |
33618034 |
T |
|
| Q |
234 |
ccatgtctcattttcttcctccaacattttca |
265 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
33618033 |
ccatgtctccttttcttcctccaacattttca |
33618002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 44831161 - 44831327
Alignment:
| Q |
69 |
gatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccatttctcatttccataagcatcattacaactaccagt----gat |
164 |
Q |
| |
|
|||| |||| |||||| ||| ||||||||||||| ||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
44831161 |
gattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatcgat |
44831260 |
T |
|
| Q |
165 |
cacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg |
231 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
44831261 |
cacaaacccatcatatagactcaatacatcatccttaaaaaactctccacgtgaaacattgtacatg |
44831327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 43725408 - 43725251
Alignment:
| Q |
172 |
ccatcataaagactcaactcatcatcctta-ggaaactctccacatgaaacttt-gtacatgtcccatgtctcattttcttcctccaacattttcaagaa |
269 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||| ||||||||||||| ||||||||| ||||||| || ||||||| |||||||| |||| |||||| ||| |
|
|
| T |
43725408 |
ccatcatagagactcaattcaccatctttaaggaaactctccacgtgaaacttttgtacatgacctatgtctccttttcttcatcca---ttttcaggaa |
43725312 |
T |
|
| Q |
270 |
tacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaac |
330 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
43725311 |
caccccaaaataccctccatacatctttatcacatgctctgaatcctctgcacacaacaac |
43725251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 43725459 - 43725405
Alignment:
| Q |
72 |
ttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccat |
126 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43725459 |
ttttgtgtgcatggagtctaatttcttaatcaatgtgacaaggtcacatatccat |
43725405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 344
Target Start/End: Complemental strand, 37023240 - 37023026
Alignment:
| Q |
130 |
tcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtaca |
229 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||| | |||||||| |||| | || || |||| |
|
|
| T |
37023240 |
tcatttccatgtgcatcactacaactaccagtgatcacaaacccatcatacagattcaaatcttcatcatctggaaactcaccacgcgccaccttataca |
37023141 |
T |
|
| Q |
230 |
tgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaa |
329 |
Q |
| |
|
||||| | ||| |||||||||||||||| ||| ||||| ||| |||||||||| | ||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
37023140 |
catcccagctttcaccttcttcctccaacattctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaa |
37023041 |
T |
|
| Q |
330 |
cgcaccaaatctctt |
344 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
37023040 |
caccccaaatctctt |
37023026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University