View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13177_high_2 (Length: 781)
Name: NF13177_high_2
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 771
Target Start/End: Complemental strand, 3499041 - 3498271
Alignment:
| Q |
1 |
aaagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgccatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3499041 |
aaagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcagctgtcttagtgactggctgatgccatatt |
3498942 |
T |
|
| Q |
101 |
attcaaatctcataccatgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnn |
200 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3498941 |
attcaaatctcatatcatgatgctggttgcgacatttatgactgaactttaaattagaattatgttatccactctttgtctttaatatctgattgttttt |
3498842 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnctaattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498841 |
tgtgtttttccttttctaattaaattgtaagatgcttgtgtgtttgacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgt |
3498742 |
T |
|
| Q |
301 |
tctgtatcacaatcaggaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498741 |
tctgtatcacaatcaggaaaggttcaacttcattggtcccaaaggcctcctactcagaatgcaacaccgcccaaatggttttgcactagtaaagggctaa |
3498642 |
T |
|
| Q |
401 |
tagaatgtgggccaagtgggattatagctgctgatgctatcatcacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3498641 |
tagaatgtgggccaagtgggattatagctgctgatgctatcatcacagacagtggtatgttacacgtggccggtgtgctagcttttagtccagctaccgt |
3498542 |
T |
|
| Q |
501 |
tatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggatt |
600 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498541 |
tatagtatgggtggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggatt |
3498442 |
T |
|
| Q |
601 |
ggttttgcccctttacctgcctttttgttcagttggcaagatcaatctataccacttcactgctcaacagtttcaaatttttcagcatatgtgagtactg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3498441 |
ggttttgcccctttacctgcctttttgttcagttggcaagatcaatctataccacttcactgctcaacagtttcaaatttttcagcatatgtgagttctg |
3498342 |
T |
|
| Q |
701 |
aagctgcaccctctacccattgttgtggtgtagcaggggtagcctttgatccaatgcgtggtggttctgtg |
771 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3498341 |
aagctgcaccctctacccagtgttgtggtgtagcaggggtagcctttgatccaacgcgtggtggttctgtg |
3498271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 219 - 615
Target Start/End: Complemental strand, 3510977 - 3510582
Alignment:
| Q |
219 |
attaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcagga |
318 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
3510977 |
attaaattgtaagatgcttgtgt--ctgacaattatagttgttttgatttcagctagatggcccaattttct--gtgtctgttctgtattacaatcagga |
3510882 |
T |
|
| Q |
319 |
aaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtg |
418 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||| | | ||| |||||||||| |
|
|
| T |
3510881 |
tcggttcaacttcattggtcccaatggcctcctactcagaatgcaacactgcacaaatggttttgcactagtaaagggctattggcatgcgggccaagtg |
3510782 |
T |
|
| Q |
419 |
ggattatagctgctgatgctatcatcacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggtttt |
518 |
Q |
| |
|
| |||||| | | |||||||||||||||||||| |||| || | ||||||||||||| |||| ||||||||||| || |||| ||||||| |||| | |
|
|
| T |
3510781 |
gaattataaccggtgatgctatcatcacagacaacggtaccttgcttgtggccggtgtgccagctgttaatccagctgccattattgtatgggaggttat |
3510682 |
T |
|
| Q |
519 |
gcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcag---cacctcttagcccacccaactggattggttttgccccttta |
615 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||||||| |||||| | | | | ||||||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
3510681 |
gcctggtcgtggaaatagtctccaattttctcccaagaaaagtatcaataatggcgtgccacctcttagcgcacccaactggagtggttttgcaccttta |
3510582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 701
Target Start/End: Complemental strand, 3510583 - 3510530
Alignment:
| Q |
648 |
tataccacttcactgctcaacagtttcaaatttttcagcatatgtgagtactga |
701 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
3510583 |
tataccacttcactgctcgccagtttcaaaattttcagcatatgtgagtcctga |
3510530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 3511103 - 3511057
Alignment:
| Q |
135 |
tttatgactgaactttaaattagaattatgttatccactatttgtct |
181 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
3511103 |
tttatgacagaattttaaattagaattatgttatcctctttttgtct |
3511057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 236 - 632
Target Start/End: Original strand, 31951329 - 31951725
Alignment:
| Q |
236 |
ttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaacttcattg |
335 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
31951329 |
ttgtgtgtctgacacttatagttgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcaggatcggttcaacttcattg |
31951428 |
T |
|
| Q |
336 |
gtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtgggattatagctgctgat |
435 |
Q |
| |
|
|||||||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||| ||| |
|
|
| T |
31951429 |
tccccaaaggccgcatactcagaatgaaacacaacccaaatggttttgcattagtaaagggctattagattgtgggccaagtggaattatagctggagat |
31951528 |
T |
|
| Q |
436 |
gctatcatcacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatg |
535 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||||| |||||||||||||||||| ||||| ||||| | || || |||||||| ||||||| |
|
|
| T |
31951529 |
gctatcatcacagacaatggtacattgcatgtggccggtgtgcgagcttttaatccagctactgttattgtatgtgaggcttctcctggacatggaaatg |
31951628 |
T |
|
| Q |
536 |
gtctggaattttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttgttcag |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||| |||||||||| |
|
|
| T |
31951629 |
gtctggaattttctcccaagacaagtattacaacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgccattttgttcag |
31951725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 228 - 633
Target Start/End: Complemental strand, 31951279 - 31950874
Alignment:
| Q |
228 |
taagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaa |
327 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||||||| ||||||| |
|
|
| T |
31951279 |
taagatgcttatgtgtctgacacttatagttgttttgatttcagctagatgacccaattttctttgtgtctgttctgtattataatcaggattggttcaa |
31951180 |
T |
|
| Q |
328 |
cttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtgggattatag |
427 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
31951179 |
cttcattggtcccaaaggcctccttctaagaaggcaacacgacccaaatggttttgcactagtaaagggctattagattgtgggccaagtgggattatat |
31951080 |
T |
|
| Q |
428 |
ctgctgatgctatcatcacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggttttgcctggaca |
527 |
Q |
| |
|
||| ||||||||||||||| ||| |||| ||| | ||||| | || || |||||||||||||||||||||||| ||||||| ||||| | |||||| |
|
|
| T |
31951079 |
ctggagatgctatcatcacacacaacggtacgttgtatgtggctgctgcgcaagcttttaatccagctaccgttattgtatgggaggtttctcatggaca |
31950980 |
T |
|
| Q |
528 |
gggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttg |
627 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
31950979 |
tggaactggtctggaatttgctcccaagacaagtattacaacttcaacacctcttagcccacccaactggagtggttttgctcctttagctgcctttttg |
31950880 |
T |
|
| Q |
628 |
ttcagt |
633 |
Q |
| |
|
|||||| |
|
|
| T |
31950879 |
ttcagt |
31950874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 681 - 771
Target Start/End: Original strand, 31951721 - 31951811
Alignment:
| Q |
681 |
ttcagcatatgtgagtactgaagctgcaccctctacccattgttgtggtgtagcaggggtagcctttgatccaatgcgtggtggttctgtg |
771 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31951721 |
ttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtg |
31951811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 752
Target Start/End: Complemental strand, 31950879 - 31950808
Alignment:
| Q |
681 |
ttcagcatatgtgagtactgaagctgcaccctctacccattgttgtggtgtagcaggggtagcctttgatcc |
752 |
Q |
| |
|
||||| |||||||||| ||||||||||| | ||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
31950879 |
ttcagtatatgtgagttttgaagctgcactcactaccaagtgttgtggtgtagtaggggtagcctttgatcc |
31950808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 3e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 117 - 450
Target Start/End: Original strand, 2354297 - 2354629
Alignment:
| Q |
117 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
216 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| | |
|
|
| T |
2354297 |
atgatgctggctgcgacatttatgactgaactttaaattagaattatgttatctagtctttgtctttaatatctaattgctttttgtgttttcccttt-c |
2354395 |
T |
|
| Q |
217 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
316 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2354396 |
taattaaattgtaagatgcttgtatgtgcgtgacttataattgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcag |
2354495 |
T |
|
| Q |
317 |
gaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaag |
416 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
2354496 |
gatcggttcaacttcattggttccaaaggcctcttactcataatgcaacacgacccaaatggttttgcactagtaaagggctattagattgtgagccaag |
2354595 |
T |
|
| Q |
417 |
tgggattatagctgctgatgctatcatcacagac |
450 |
Q |
| |
|
||| |||||||||| || | |||||||||||||| |
|
|
| T |
2354596 |
tggtattatagctggtggttctatcatcacagac |
2354629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 117 - 447
Target Start/End: Complemental strand, 2354969 - 2354640
Alignment:
| Q |
117 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
216 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| || | |
|
|
| T |
2354969 |
atgatgatggtcgcgacatttatgactgaactttaaattagaaatatgttatccagtctttgtctttagtatctgactgcttcttgtgttttcccttt-c |
2354871 |
T |
|
| Q |
217 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
316 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||| || |||||||||||| || | ||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
2354870 |
taattatttagtaagatgcttgtgtgtctgacacttataattattttgatttcagataaaaggcccaattttctttgtgtctgttctgtattacaatcag |
2354771 |
T |
|
| Q |
317 |
gaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaag |
416 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
2354770 |
gatcggttcaacttcattggtctgaaaggcctcctactcagaatgcaacacggcccaaatggttttgcactagtaaagggctattagattgtgggccaag |
2354671 |
T |
|
| Q |
417 |
tgggattatagctgctgatgctatcatcaca |
447 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
2354670 |
tgggattatagctggagatgctatcatcaca |
2354640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 2355119 - 2355045
Alignment:
| Q |
22 |
atgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgcca |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2355119 |
atgatttctctttttatatttgagatgaatgttgatgccatattattcaactgtcttagtgattggccgatgcca |
2355045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 2354145 - 2354222
Alignment:
| Q |
22 |
atgatttctctttttatatttgagatgaaggctgatgcca---tattattcaactgtcttagtgactggctgatgcca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| | |||||||||||| |
|
|
| T |
2354145 |
atgatttctctttttatatttgagatgaaggctgatgccatattattattcagctttcttagttattggctgatgcca |
2354222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 704
Target Start/End: Complemental strand, 35567868 - 35567823
Alignment:
| Q |
659 |
actgctcaacagtttcaaatttttcagcatatgtgagtactgaagc |
704 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
35567868 |
actgctcaccagtttcaaatttttcggcatatgtgagtcctgaagc |
35567823 |
T |
|
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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 22925838 - 22925947
Alignment:
| Q |
241 |
tgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgta-tcacaatcaggaaaggttcaacttcattggtcc |
339 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| |||||||||| | ||||| ||||||| ||||||| || |||| || |||||||||||||||||| |
|
|
| T |
22925838 |
tgtctaacacttgcaattgctttgatttcagttagatggcccgattttctttgtgtctcttctgtattctcaattagccttagttcaacttcattggtcc |
22925937 |
T |
|
| Q |
340 |
caaaggcctc |
349 |
Q |
| |
|
||| |||||| |
|
|
| T |
22925938 |
caatggcctc |
22925947 |
T |
|
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