View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_high_20 (Length: 377)
Name: NF13177_high_20
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 38632148 - 38631961
Alignment:
| Q |
184 |
atctcttgcattgtatcctcgttgatgttgatttttcatcctcttactaatcagtagttagtaggtataacttatattcaaagttgaactaaataatccg |
283 |
Q |
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| T |
38632148 |
atctcttgcattgtatcctcgttgatgttgatttttcatcctcttactaatcagtagttagtaggtataacttatattcaaagttgaactaaataatccc |
38632049 |
T |
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| Q |
284 |
aaacctgacagtcaaactcaacccaaaactatcattcccccttagtataccttccttctgtatcctcccatacacaccagaataattt |
371 |
Q |
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| T |
38632048 |
aaacctgacagtcaaactcaacccaaaactatcattcccccttagtataccttccttctgtatcctcccatacacaccaaaacaattt |
38631961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 38633422 - 38633298
Alignment:
| Q |
20 |
attgtgttttgtataacttttatatacgtcgatataggtaaaggaaaatattttatggatattcaatatctgttatacccctttaaaagaaaataaataa |
119 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
38633422 |
attgtgttttgtataactttcatatacgtctacataggtaaaggaaaatatttaatggatattcaatat-tgttatacccctttaagagaaaataaataa |
38633324 |
T |
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| Q |
120 |
agagtttgatgtgatagatatgatat |
145 |
Q |
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| T |
38633323 |
agagcttgatgtgatagatatgatat |
38633298 |
T |
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