View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_high_22 (Length: 371)

Name: NF13177_high_22
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_high_22
NF13177_high_22
[»] chr3 (9 HSPs)
chr3 (155-371)||(16896558-16896775)
chr3 (155-371)||(30936642-30936859)
chr3 (155-371)||(19233026-19233222)
chr3 (155-370)||(11584003-11584219)
chr3 (162-321)||(33981007-33981167)
chr3 (111-157)||(16896496-16896542)
chr3 (111-149)||(11584243-11584281)
chr3 (111-157)||(19233238-19233284)
chr3 (235-302)||(19652820-19652888)
[»] chr7 (7 HSPs)
chr7 (155-371)||(34206270-34206487)
chr7 (155-371)||(4163979-4164196)
chr7 (219-371)||(43108951-43109104)
chr7 (111-367)||(45459376-45459633)
chr7 (155-302)||(45845329-45845477)
chr7 (111-157)||(4164212-4164258)
chr7 (111-157)||(34206503-34206549)
[»] chr4 (14 HSPs)
chr4 (155-371)||(38947860-38948077)
chr4 (155-371)||(53679096-53679313)
chr4 (155-367)||(19837079-19837292)
chr4 (155-361)||(19309570-19309777)
chr4 (155-278)||(43469880-43470004)
chr4 (197-325)||(7446747-7446876)
chr4 (229-317)||(25459088-25459177)
chr4 (111-157)||(38947798-38947844)
chr4 (202-325)||(10009220-10009344)
chr4 (111-157)||(53679034-53679080)
chr4 (155-315)||(17995524-17995685)
chr4 (278-370)||(8932837-8932929)
chr4 (274-319)||(38655101-38655146)
chr4 (156-192)||(21479773-21479809)
[»] chr6 (11 HSPs)
chr6 (155-371)||(16467359-16467576)
chr6 (155-371)||(1308650-1308867)
chr6 (155-371)||(26711173-26711389)
chr6 (160-367)||(5874597-5874805)
chr6 (265-371)||(33146563-33146669)
chr6 (150-370)||(3489836-3490057)
chr6 (270-325)||(33754270-33754325)
chr6 (235-325)||(17713658-17713749)
chr6 (111-157)||(1308588-1308634)
chr6 (268-306)||(23651672-23651710)
chr6 (111-154)||(26711408-26711451)
[»] chr2 (10 HSPs)
chr2 (155-371)||(44940170-44940387)
chr2 (159-371)||(79715-79928)
chr2 (201-371)||(3153267-3153438)
chr2 (155-317)||(14164387-14164550)
chr2 (107-157)||(44940403-44940453)
chr2 (17-56)||(41231826-41231865)
chr2 (155-315)||(20635052-20635213)
chr2 (155-191)||(17931210-17931246)
chr2 (155-195)||(27336616-27336656)
chr2 (155-259)||(39768118-39768222)
[»] chr1 (7 HSPs)
chr1 (159-371)||(10385899-10386113)
chr1 (162-321)||(31459066-31459226)
chr1 (268-325)||(35368028-35368085)
chr1 (235-325)||(36192861-36192952)
chr1 (270-325)||(48434136-48434191)
chr1 (241-320)||(32641862-32641942)
chr1 (155-191)||(39496261-39496297)
[»] chr5 (6 HSPs)
chr5 (158-370)||(841924-842137)
chr5 (155-370)||(2681682-2681898)
chr5 (155-317)||(16421664-16421827)
chr5 (298-371)||(9263911-9263984)
chr5 (262-307)||(13640743-13640788)
chr5 (234-310)||(38437060-38437137)
[»] chr8 (4 HSPs)
chr8 (215-371)||(13404022-13404179)
chr8 (155-361)||(41691743-41691950)
chr8 (235-325)||(17858800-17858891)
chr8 (155-191)||(33989032-33989068)
[»] scaffold0674 (1 HSPs)
scaffold0674 (155-315)||(2327-2488)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 16896558 - 16896775
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16896558 gtggtgtgtatcaaatgctcatgcggcaggagatacacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 16896657  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    |||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16896658 cgcgtggcgtcttctccgcaatagatggtcaacaaaggataacttggtgcgacgaggtgttatttcttatgattctcaattttgtgttacaggttgtgga 16896757  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  16896758 caaaatgaaacaatagac 16896775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 30936642 - 30936859
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||    
T  30936642 gtggtgtgtatcaaatgctcatgcggcaagagatgcacaattatgacgttgtttcgaatgctccgtggcataagagtgctcctctaaaagtctctatttg 30936741  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30936742 cgtgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatttcttatgattctcaattttgtgttacaggttgtgga 30936841  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  30936842 caaaatgaaacaatagac 30936859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 19233222 - 19233026
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19233222 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaactatgatgttggttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 19233123  T
Q  255 cgcgtccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggac 354  Q
    ||||                    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||    
T  19233122 cgcg--------------------tggccaacaaaggataacttggtgtgacgagatgttatttctcatgattctcaattatgtgttacaggttgtggac 19233043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 370
Target Start/End: Complemental strand, 11584219 - 11584003
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||| ||| ||| |||| |||||  | ||||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  11584219 gtggtgtgtatcaaatgctcacgcgacaggagattcacaaccacgacgtcgtttcggattctccttggcataggagtgctcctttgaaagtttttatttg 11584120  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    || ||   ||||||||| ||||||||| ||||||||||||||||||||| |||  |||||||||||| ||||||| ||||| | ||||| | | |||||     
T  11584119 cgtgtggtgtcttctcctcaatagatgtccaacaaaggataacttggtgcgacagggtgttatttctaatgattcccaattatttgttacaagatgtggc 11584020  T
Q  354 caaaatgacacaataga 370  Q
    |||||||| ||||||||    
T  11584019 caaaatgaaacaataga 11584003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 33981167 - 33981007
Alignment:
Q  162 gtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc- 260  Q
    |||||||||||| ||| ||||| |||| ||  || |||| || | |||| |||| || ||||| || | || |||||| ||||||||||||||||  |      
T  33981167 gtatcaaatgcttatgaggcaggagatacaggatgatgatgtagcttcgaatgcaccatggcacaaaaatgttcctttaaaagtttctatttgcgtttgg 33981068  T
Q  261 cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttctt 321  Q
    |||||  |||||||||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  33981067 cgtctcatccgcaatagatggccgacaaaggacaacttggtgcgtcgaggtgttatttctt 33981007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 16896496 - 16896542
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  16896496 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 16896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 11584281 - 11584243
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaa 149  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11584281 gcaggatactgaattagatgtttggctttggcggcccaa 11584243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 19233284 - 19233238
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  19233284 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 19233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 19652820 - 19652888
Alignment:
Q  235 cctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtg 302  Q
    ||||| ||||| ||||||||||| |  |||||  |||||||||||||||| ||||||||||||||||||    
T  19652820 cctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggataacttggtg 19652888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 34206487 - 34206270
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  34206487 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttg 34206388  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    |||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  34206387 cgcgtggcgtcttctccgcaataaatggccaacaaaggataacttggtgcgacgaggtgttatttcttatgatactcaattttgtgttacaggttgtgga 34206288  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  34206287 caaaatgaaacaatagac 34206270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 4164196 - 4163979
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  4164196 gtggtgtgtatcaaatgctcatgcggcaggagaggcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttg 4164097  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
     ||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4164096 ggcgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatttcttatgatactcaattttgtgttacaggttgtgga 4163997  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  4163996 caaaatgaaacaatagac 4163979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 371
Target Start/End: Original strand, 43108951 - 43109104
Alignment:
Q  219 gtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatt 317  Q
    ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43108951 gtggcataagagtgctcctctgaaagtctctatttgcgcgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatt 43109050  T
Q  318 tcttatgattctcaattttgtgttataggttgtggacaaaatgacacaatagac 371  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||    
T  43109051 tcttatgatactcaattttgtgttacaggatgtggacaaaatgaaacaatagac 43109104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 367
Target Start/End: Complemental strand, 45459633 - 45459376
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcg 210  Q
    |||||| ||||||  ||| || ||||||||||| || |||||||||| |||| |||||||||||||||||||| ||||||||||  |  ||||  |||||    
T  45459633 gcaggaaactgaaccagaagtctggctttggcgacctaatattggtgatgtggatcaaatgctcatgcggcaggagatgcacaaccacaacgtcatttcg 45459534  T
Q  211 gatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgag 309  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||||| |  |||||| |||||||||||||||||||||||||||| |||||| | ||||    
T  45459533 gatgctccttggcataagagtgttcctttgaaagtttatatttgcgcttggcgtcttttccgcaatagatggccaacaaaggataatttggtgcggcgag 45459434  T
Q  310 gtgttatttcttatgattctcaattttgtgttataggttgtggacaaaatgacacaat 367  Q
    |||||||| || ||||| | ||||| || |||| ||| |||||| ||||||| |||||    
T  45459433 gtgttattactaatgatacccaattatgcgttacaggatgtggaaaaaatgaaacaat 45459376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 302
Target Start/End: Original strand, 45845329 - 45845477
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||| ||||||||||||||||| | ||| |||||||| ||  ||||||||||||||  || || ||||||||  ||| ||||| |||||| |||||| |    
T  45845329 gtggtatgtatcaaatgctcatgagacaggagatgcacgatcgtgacgttgtttcggtggcaccttggcataaaggtgttccttagaaagtctctattag 45845428  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtg 302  Q
    |||||  |||||  | | |||||||||||| ||||||||||||||||||    
T  45845429 cgcgtggcgtctctttcacaatagatggccgacaaaggataacttggtg 45845477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 4164258 - 4164212
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  4164258 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 4164212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 34206549 - 34206503
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  34206549 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 34206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 38947860 - 38948077
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  38947860 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaattatgacgttgtttcggatgctccgtggtataagagtgctcctttgaaagtctctatttg 38947959  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    | |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  38947960 ctcgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatttctcatgattctcaattatgtgttacaggttgtgga 38948059  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  38948060 caaaatgaaacaatagac 38948077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 53679096 - 53679313
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  53679096 gtggtgtgtatcaaatgctcttgcggcaggagatgcacaactatgacgttgtctcggatgctccgtggcataagagtgctccgttgaaagtctctatttg 53679195  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    |||||  ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  53679196 cgcgtggcgtgttctccgcaatagatggccaactaaggataacttggtgcgacgaggtgttatttctcatgattctcaattatgtgttacaggttgtgga 53679295  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  53679296 caaaatgaaacaatagac 53679313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 155 - 367
Target Start/End: Complemental strand, 19837292 - 19837079
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| || |||||||  | ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  19837292 gtggtgtgtatcaaatgctcatgcggcaggaggtgcacaaccacgacgtcgtttcggatgctccttggcataagagtgttcctttgaaagtttctatttg 19837193  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    ||| |  ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| || ||||| | ||||| || |||| ||| ||||||    
T  19837192 cgcttggcgtcttctccgcaatagatggccaacaaaggataatttggtgcggcgaggtgttattactaatgatacccaattatgcgttagaggatgtgga 19837093  T
Q  354 caaaatgacacaat 367  Q
     ||||||| |||||    
T  19837092 aaaaatgaaacaat 19837079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 361
Target Start/End: Original strand, 19309570 - 19309777
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||  ||||||||||  | ||  | |||||||||||||| ||||| ||||||| |||||||||||| ||||||||    
T  19309570 gtggtgtgtatcaaatgctcatgcggcaagagatgcacaaccacgatatcgtttcggatgctccttggcacaagagtgttcctttgaaagtctctatttg 19309669  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
     || |  |||||  | ||||||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||| ||||| ||||||| ||| |||||     
T  19309670 tgcatggcgtctctttcgcaatagatgaccaacaaaggataacttggtgcggcgaggtgttatatctcatgattcacaattgtgtgttacaggatgtggc 19309769  T
Q  354 caaaatga 361  Q
    ||||||||    
T  19309770 caaaatga 19309777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 43469880 - 43470004
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    |||||||||||||||||||| || |||||||||| || ||  | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  43469880 gtggtgtgtatcaaatgctcgtgtggcagaagatacataaccacgacgttgtttcggatgctccttggcataagagtgttcctttgaaagtttctatttg 43469979  T
Q  255 cgcgt-ccgtcttctccgcaataga 278  Q
    |||||  |||||||||| |||||||    
T  43469980 cgcgtggcgtcttctccacaataga 43470004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 7446876 - 7446747
Alignment:
Q  197 atgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataa 295  Q
    |||| |||| ||||||||| || ||||| || | ||  ||||||||||| ||||||||||| |  |||||  |||||||||||||||| |||||||| ||    
T  7446876 atgatgttgcttcggatgcaccatggcacaaaaatgtccctttgaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggacaa 7446777  T
Q  296 cttggtgtgacgaggtgttatttcttatga 325  Q
    ||||||| | ||||||||||||||| ||||    
T  7446776 cttggtgcgtcgaggtgttatttctaatga 7446747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 25459088 - 25459177
Alignment:
Q  229 agtgctcctttgaaagtttctatttgcgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatt 317  Q
    |||| |||||||||||||||||||||||| | ||||||  | || ||||||||||| ||||||||||| |||||| | ||||||||||||    
T  25459088 agtgttcctttgaaagtttctatttgcgcatgccgtctctttcgtaatagatggccgacaaaggataatttggtgcggcgaggtgttatt 25459177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 38947798 - 38947844
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  38947798 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 38947844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 10009220 - 10009344
Alignment:
Q  202 gttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttgg 300  Q
    ||||||| |||||| || ||||| || | || |||||| ||||| ||||||||||| |  |||||  |||||||||||||||| |||||||| || ||||    
T  10009220 gttgttttggatgcaccatggcacaaaaatgttcctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggacaatttgg 10009319  T
Q  301 tgtgacgaggtgttatttcttatga 325  Q
    || | |||| |||||||||| ||||    
T  10009320 tgcgtcgagctgttatttctaatga 10009344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 53679034 - 53679080
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  53679034 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 53679080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 17995685 - 17995524
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  17995685 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 17995586  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgtta 315  Q
    | |||  ||  |  |||  ||||||||||| |||||||||||||||||| | ||||| ||||    
T  17995585 cacgtgacgcatcttccaaaatagatggccgacaaaggataacttggtgcgtcgaggcgtta 17995524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 8932837 - 8932929
Alignment:
Q  278 atggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaaatgacacaataga 370  Q
    |||||| |||||||||||||| ||| |||||||||||||   |  ||| || ||||| ||||||| ||| ||||| |||||||| ||||||||    
T  8932837 atggccgacaaaggataacttcgtgcgacgaggtgttataattagtgactcccaattgtgtgttacaggatgtggccaaaatgaaacaataga 8932929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 38655146 - 38655101
Alignment:
Q  274 atagatggccaacaaaggataacttggtgtgacgaggtgttatttc 319  Q
    |||||||||| |||||||| ||||||||| | ||||||||||||||    
T  38655146 atagatggccgacaaaggacaacttggtgcgtcgaggtgttatttc 38655101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 21479809 - 21479773
Alignment:
Q  156 tggtgtgtatcaaatgctcatgcggcagaagatgcac 192  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  21479809 tggtgtgtatcaaatgctcatgaggcaggagatgcac 21479773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 16467576 - 16467359
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16467576 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaaatatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 16467477  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    |||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  16467476 cgcgtggcgtcttctccgaaataaatggccaacaaaggataacttggtgcgacgaggtgttatttctcatgattctcaattatgtgttacaggttgtgga 16467377  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  16467376 caaaatgaaacaatagac 16467359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 1308650 - 1308867
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1308650 gtggtgtatatcaaatgctcttgcggcaggagatgcacagttatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 1308749  T
Q  255 cgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
     ||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  1308750 tgcgtggcgtcttctccacaatagatggccaacaaaggataacttggtgcgacgaggtgttatttcttatgattctcaattatgtgttacatgttgtgga 1308849  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  1308850 caaaatgaaacaatagac 1308867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 26711389 - 26711173
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||    
T  26711389 gtggtgtgtatcaaatgctcatgcggtaggagatgcacaactatgacgttgtttcgaatgctttgtggcataagagtgctcctttgaaagtctctatttg 26711290  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  26711289 cgtgtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacga-gtgttatttctcatgattctcaattatgtattacaggttgtgga 26711191  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  26711190 caaaatgaaacaatagac 26711173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 160 - 367
Target Start/End: Original strand, 5874597 - 5874805
Alignment:
Q  160 gtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgt 259  Q
    |||| ||||||||||||||||||| ||||||||||  |||| || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |    
T  5874597 gtgtgtcaaatgctcatgcggcaggagatgcacaaccatgatgtcgtttcggatgctccttggcataagagtgttcccttgaaagtttctatttgcgctt 5874696  T
Q  260 -ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaaa 358  Q
      ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| || ||||| | ||||| || |||| | | |||||| ||||    
T  5874697 ggcgtcttctccgcaatagatggccaacaaaggataatttggtgcggcgaggtgttattactaatgatacccaattatgcgttacatgatgtggaaaaaa 5874796  T
Q  359 tgacacaat 367  Q
    ||| |||||    
T  5874797 tgaaacaat 5874805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 33146563 - 33146669
Alignment:
Q  265 ttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaaatgacac 364  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||    
T  33146563 ttctccgcaatagatggccaacaaaggataacttggtgcgacgatgtgttatttctcatgattctcaattatgtgttacaggttgtggacaaaatgaaac 33146662  T
Q  365 aatagac 371  Q
    |||||||    
T  33146663 aatagac 33146669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 370
Target Start/End: Original strand, 3489836 - 3490057
Alignment:
Q  150 tattggtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttct 249  Q
    |||| ||||||||||||||||||||||||| ||  ||||||| ||  | ||  | |||||||||||||| | ||| ||||||| |||||| ||||| |||    
T  3489836 tattagtggtgtgtatcaaatgctcatgcgacaagagatgcataaccacgatatcgtttcggatgctccttagcacaagagtgttcctttaaaagtctct 3489935  T
Q  250 atttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggtt 348  Q
    ||||| || |  |||||  | |||||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||||| ||||| ||||||| |||||    
T  3489936 atttgtgcatggcgtctctttcgcaatcgatggccaacaaagaataacttggtgcggcgaggtgttatttctcatgattcacaattgtgtgttacaggtt 3490035  T
Q  349 gtggacaaaatgacacaataga 370  Q
    |||| |||||||| ||| ||||    
T  3490036 gtggccaaaatgaaacattaga 3490057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 33754270 - 33754325
Alignment:
Q  270 cgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||    
T  33754270 cgcaatagatggccgacaaaggataacttggtgcgtcgaggtgttatttctcatga 33754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 17713658 - 17713749
Alignment:
Q  235 cctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    ||||| ||||| ||||||||||| |  |||||  |||||||||||||||| ||||||||  |||||||| | ||||||||||||||| ||||    
T  17713658 cctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggaccacttggtgcgtcgaggtgttatttctaatga 17713749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 1308588 - 1308634
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||    
T  1308588 gcaggatactgaatcagatgtttgactttggcggcccaacattggtg 1308634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 23651710 - 23651672
Alignment:
Q  268 tccgcaatagatggccaacaaaggataacttggtgtgac 306  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23651710 tccgcaatagatggccgacaaaggataacttggtgtgac 23651672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 26711451 - 26711408
Alignment:
Q  111 gcaggatactgaatgagatgtttggctttggcggcccaatattg 154  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  26711451 gcaggatactgaattagatgtctggctttggcggcccaacattg 26711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 44940387 - 44940170
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44940387 gtggtatgtatcaaatgctcatgcggcaggagatgcacaattatgacattgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 44940288  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
    |||||  |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  44940287 cgcgtggcgtcttctccgcaatagatgaccagcaaaggataatttggtgtgacgaggtgttatttcttatgattctcaattttgtgttacatgttgtgga 44940188  T
Q  354 caaaatgacacaatagac 371  Q
    |||||||| |||||||||    
T  44940187 caaaatgaaacaatagac 44940170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 159 - 371
Target Start/End: Complemental strand, 79928 - 79715
Alignment:
Q  159 tgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcg 258  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  79928 tgtgtatcaaatgctcatgcggcaggagatgcataattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttgcgcg 79829  T
Q  259 t-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaa 357  Q
    |  ||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  79828 tggcgtcttctccgtaataaatggcctacaaaggataacttggtgcgacgaggtgttatttctcatgattctcaattatgtgttacaggttgtggacaaa 79729  T
Q  358 atgacacaatagac 371  Q
    |||| |||||||||    
T  79728 atgaaacaatagac 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 201 - 371
Target Start/End: Original strand, 3153267 - 3153438
Alignment:
Q  201 cgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttg 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  3153267 cgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttgcgcgtggcgtcttctccgcaatagatggccaacaaaggataacttg 3153366  T
Q  300 gtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaaatgacacaatagac 371  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  3153367 gtgcgacgaggtgttatttcttatgatactcaattttgtgttacaggttgtggacaaaatgaaacaatagac 3153438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 317
Target Start/End: Complemental strand, 14164550 - 14164387
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||| ||||| ||| ||||| |||| ||||  ||||| ||   | |||||||||| ||||||||||||| |||||||||||| ||||| ||    
T  14164550 gtggtgtgtatcatatgcttatgaggcaggagatacacagctatgatgtcactgcggatgctccttggcataagagtgttcctttgaaagtgtctatctg 14164451  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatt 317  Q
    ||| |  || ||  | | |||||||||||| ||||||||||| |||||| | || |||||||||    
T  14164450 cgcttggcgactctttcacaatagatggccgacaaaggataatttggtgcggcgcggtgttatt 14164387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 44940453 - 44940403
Alignment:
Q  107 tcccgcaggatactgaatgagatgtttggctttggcggcccaatattggtg 157  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44940453 tcccgcaggatactgaatcagatgtttggctttggcggcccaacattggtg 44940403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 41231865 - 41231826
Alignment:
Q  17 agaatctagctgaaattaccaggcatgtaactatgcaaat 56  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  41231865 agaatctagctgaaattaccaggcatgtaactatgaaaat 41231826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 20635213 - 20635052
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  20635213 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 20635114  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgtta 315  Q
    | |||  ||  |  |||  ||||||||||| |||||||||||||||||| | ||||| ||||    
T  20635113 cacgtgacgcatcttccaaaatagatggccgacaaaggataacttggtgcgtcgaggcgtta 20635052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 17931246 - 17931210
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgca 191  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17931246 gtggtgtgtatcaaatgctcatgcggcaggagatgca 17931210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 27336616 - 27336656
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaat 195  Q
    |||||||||||||||||||||||| |||| ||||| |||||    
T  27336616 gtggtgtgtatcaaatgctcatgcagcaggagatgtacaat 27336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 39768118 - 39768222
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    |||||||||||||||||| |||| ||||| | ||||||||  | || ||||||||  |  || | |||||||| |||| ||||||||||||   ||||||    
T  39768118 gtggtgtgtatcaaatgcccatgaggcaggatatgcacaaccacgatgttgtttccaagacttcttggcataaaagtgttcctttgaaagtccatatttg 39768217  T
Q  255 cgcgt 259  Q
    |||||    
T  39768218 cgcgt 39768222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 159 - 371
Target Start/End: Original strand, 10385899 - 10386113
Alignment:
Q  159 tgtgtatcaaatgctca-tgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgc 257  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10385899 tgtgtatcaaatgctccgtgcggcaggagaggcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtttctatttgcgc 10385998  T
Q  258 gtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaa 356  Q
    ||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  10385999 gtggcgtcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttatttcttatgatactcaattttgtgttacaggttgtggacaa 10386098  T
Q  357 aatgacacaatagac 371  Q
    ||||| |||||||||    
T  10386099 aatgaaacaatagac 10386113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 31459226 - 31459066
Alignment:
Q  162 gtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc- 260  Q
    |||||||||||| ||| ||||| |||| ||  || |||| |||| |||| |||| || ||||| || | || |||||| ||||||||||||||||  |      
T  31459226 gtatcaaatgcttatgaggcaggagatacaggatgatgatgttgcttcgaatgcaccatggcacaaaaatgttcctttaaaagtttctatttgcgtttgg 31459127  T
Q  261 cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttctt 321  Q
    |||||  |||||||||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  31459126 cgtctcatccgcaatagatggccgacaaaggacaacttggtgcgtcgaggtgttatttctt 31459066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 35368028 - 35368085
Alignment:
Q  268 tccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    |||||||||||||||| |||||||| ||||||||| | ||||||||||||||| ||||    
T  35368028 tccgcaatagatggccgacaaaggacaacttggtgcgtcgaggtgttatttctcatga 35368085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 36192861 - 36192952
Alignment:
Q  235 cctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    ||||| ||||| ||||||||||| |  |||||  |||||||||||||||| |||||||| || |||||| | ||||||||||||||| ||||    
T  36192861 cctttaaaagtctctatttgcgcttggcgtctcatccgcaatagatggccgacaaaggacaatttggtgcgtcgaggtgttatttctaatga 36192952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 48434191 - 48434136
Alignment:
Q  270 cgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||||| ||||    
T  48434191 cgcaatagatggccgacaaaggacaacttggtgcgtcgaggtgttatttctaatga 48434136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 32641942 - 32641862
Alignment:
Q  241 aaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttct 320  Q
    ||||||||||||||||| |  |||||  |||||||||||||||| |||||||| |||||  || | || ||||||||||||    
T  32641942 aaagtttctatttgcgcatggcgtctcatccgcaatagatggccgacaaaggacaacttaatgcgtcgtggtgttatttct 32641862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 39496297 - 39496261
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgca 191  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39496297 gtggtgtgtatcaaatgctcatgcagcaggagatgca 39496261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 158 - 370
Target Start/End: Complemental strand, 842137 - 841924
Alignment:
Q  158 gtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgc 257  Q
    |||||||||||||||||||||| ||| ||||||| ||  | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  842137 gtgtgtatcaaatgctcatgcgacaggagatgcataaccacgacgtcgtttcggatgctccttggcataagagtgctcctttgaaagtttctatttgtgc 842038  T
Q  258 gtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaa 356  Q
    ||  | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||| ||| ||||| |||    
T  842037 gtggcatcttctccgcaatagatggccaacaaaggataacttggtgcgacgaggtgttattactaatgattctcaattatgtgttacaggatgtggccaa 841938  T
Q  357 aatgacacaataga 370  Q
    ||||| ||||||||    
T  841937 aatgaaacaataga 841924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 370
Target Start/End: Complemental strand, 2681898 - 2681682
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||| |||||||| |||||||||||||||| ||||||  ||||||||||    
T  2681898 gtggtgtgtatcaaatgctcatgcggcaggagatgcataaccatgacgttgtttcagatgctccttggcataagagtgctcatttgaagatttctatttg 2681799  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
       ||  ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| || ||||  |||| || |||| ||| ||||||    
T  2681798 tttgtggcgtcttctccgtaatagatggccaacaaaggataacttggtgcgacggggtgttatttctaataattcataattatgcgttacaggatgtgga 2681699  T
Q  354 caaaatgacacaataga 370  Q
    |||||||| ||| ||||    
T  2681698 caaaatgaaacagtaga 2681682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 16421664 - 16421827
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    |||||||||||||||||||||||  |||| |||| |||||||| |||||||||||||| || || |||| ||| |||| |  ||||||||||  ||||||    
T  16421664 gtggtgtgtatcaaatgctcatgaagcaggagatacacaattacgacgttgtttcggaggcaccttggcttaaaagtgtttttttgaaagttcttatttg 16421763  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatt 317  Q
    |||||  | |||| |||||||||| ||| |||||||||||||||||||| ||||||| ||||||    
T  16421764 cgcgtggcatcttttccgcaatagttggtcaacaaaggataacttggtgcgacgaggcgttatt 16421827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 9263911 - 9263984
Alignment:
Q  298 tggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtggacaaaatgacacaatagac 371  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| | |||||||||    
T  9263911 tggtgtgacgaggtgttatttctcatgattctcaattatgtgttatgggttgtggacaaaataaaacaatagac 9263984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 13640743 - 13640788
Alignment:
Q  262 gtcttctccgcaatagatggccaacaaaggataacttggtgtgacg 307  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||    
T  13640743 gtcttttccgcaatagatggccgacaaaggataacttggtgcgacg 13640788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 38437137 - 38437060
Alignment:
Q  234 tcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgagg 310  Q
    ||||||||||||||||||||| | ||  |||||  |||||||||||||||| ||||| || ||||||||| |||||||    
T  38437137 tcctttgaaagtttctatttgtgtgtggcgtctcttccgcaatagatggccgacaaaagacaacttggtgcgacgagg 38437060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 215 - 371
Target Start/End: Complemental strand, 13404179 - 13404022
Alignment:
Q  215 ctccgtggcataagagtgctcctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgt 313  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13404179 ctccgtggcataagagtgctcctttgaaaatctctatttgcgcgtggcgtcttttccgcaatagatggccaacaaaggataacttggtgcgacgaggtgt 13404080  T
Q  314 tatttcttatgattctcaattttgtgttataggttgtggacaaaatgacacaatagac 371  Q
    ||||||| ||||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  13404079 tatttctcatgattctcaattatctgttacaggttgtggacaaaatgaaacaatagac 13404022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 155 - 361
Target Start/End: Original strand, 41691743 - 41691950
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||||||| || |  |||| |||||| ||||  | |||||||||||||| |||||||||| || |||||||||||||||||||||    
T  41691743 gtggtgtgtatcaaatgctcatgaggtaagagatacacaatcatgatatcgtttcggatgctccttggcataagaatgttcctttgaaagtttctatttg 41691842  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatgattctcaattttgtgttataggttgtgga 353  Q
     || |  |||||| | |||||||||||||||||||||||||| |||||| | ||||| ||| | ||| ||||||| ||||| ||||||| ||| |||||     
T  41691843 tgcatggcgtcttttacgcaatagatggccaacaaaggataatttggtgcggcgaggcgttttatctcatgattcacaattgtgtgttacaggatgtggt 41691942  T
Q  354 caaaatga 361  Q
    ||||||||    
T  41691943 caaaatga 41691950  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 17858800 - 17858891
Alignment:
Q  235 cctttgaaagtttctatttgcgcgtc-cgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgttatttcttatga 325  Q
    ||||||||||| ||||||||||| |  |||||  || ||||||||||||| |||||||| ||| ||||| | ||||||||||||||| ||||    
T  17858800 cctttgaaagtctctatttgcgcttggcgtctcatctgcaatagatggccgacaaaggacaacatggtgcgtcgaggtgttatttctaatga 17858891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 33989032 - 33989068
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgca 191  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  33989032 gtggtgtgtatcaaatgctcatgaggcaggagatgca 33989068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 2327 - 2488
Alignment:
Q  155 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 254  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  2327 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 2426  T
Q  255 cgcgt-ccgtcttctccgcaatagatggccaacaaaggataacttggtgtgacgaggtgtta 315  Q
    | |||  ||  |  |||  ||||||||||| |||||||||||||||||| | ||||| ||||    
T  2427 cacgtgacgcatcttccaaaatagatggccgacaaaggataacttggtgcgtcgaggcgtta 2488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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