View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_high_26 (Length: 334)

Name: NF13177_high_26
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_high_26
NF13177_high_26
[»] chr2 (7 HSPs)
chr2 (94-316)||(24845260-24845481)
chr2 (163-316)||(33084251-33084403)
chr2 (70-150)||(36538077-36538157)
chr2 (91-150)||(33830890-33830949)
chr2 (102-151)||(11027286-11027335)
chr2 (91-144)||(26435773-26435826)
chr2 (91-151)||(18667124-18667184)
[»] chr4 (23 HSPs)
chr4 (167-294)||(8356070-8356196)
chr4 (162-246)||(8354612-8354696)
chr4 (167-296)||(43144427-43144555)
chr4 (151-283)||(8035966-8036098)
chr4 (165-287)||(8359126-8359247)
chr4 (163-276)||(8411099-8411211)
chr4 (165-287)||(8416703-8416824)
chr4 (163-283)||(8041380-8041499)
chr4 (163-287)||(9138560-9138683)
chr4 (57-150)||(21436307-21436400)
chr4 (65-150)||(43386534-43386619)
chr4 (91-150)||(12790227-12790286)
chr4 (174-287)||(8404062-8404174)
chr4 (65-142)||(52812975-52813052)
chr4 (86-141)||(38493680-38493735)
chr4 (91-148)||(1167772-1167829)
chr4 (91-148)||(1170254-1170311)
chr4 (65-150)||(51994083-51994168)
chr4 (65-141)||(7505433-7505509)
chr4 (70-150)||(19850132-19850212)
chr4 (103-151)||(28266832-28266880)
chr4 (99-147)||(48151821-48151869)
chr4 (70-150)||(50605455-50605535)
[»] chr6 (2 HSPs)
chr6 (57-141)||(4442042-4442126)
chr6 (65-141)||(6998585-6998661)
[»] chr8 (1 HSPs)
chr8 (91-150)||(9413345-9413404)
[»] chr7 (8 HSPs)
chr7 (170-287)||(5476606-5476722)
chr7 (49-116)||(8390177-8390244)
chr7 (59-141)||(23236831-23236908)
chr7 (70-151)||(5776625-5776706)
chr7 (99-152)||(41449150-41449203)
chr7 (99-144)||(33124104-33124149)
chr7 (65-141)||(17026053-17026129)
chr7 (70-150)||(33172197-33172272)
[»] chr3 (6 HSPs)
chr3 (91-150)||(33895916-33895975)
chr3 (70-150)||(7029135-7029215)
chr3 (99-150)||(7521824-7521875)
chr3 (70-151)||(39133777-39133858)
chr3 (99-151)||(19561491-19561543)
chr3 (91-151)||(54394122-54394182)
[»] chr1 (4 HSPs)
chr1 (49-150)||(31868894-31868990)
chr1 (70-151)||(32179332-32179413)
chr1 (50-151)||(36118229-36118325)
chr1 (91-151)||(48575817-48575877)
[»] scaffold0658 (1 HSPs)
scaffold0658 (91-150)||(6474-6533)
[»] chr5 (5 HSPs)
chr5 (65-151)||(26299445-26299531)
chr5 (56-141)||(1841023-1841108)
chr5 (91-144)||(18879626-18879679)
chr5 (70-150)||(3805433-3805513)
chr5 (91-151)||(17066258-17066317)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 94 - 316
Target Start/End: Original strand, 24845260 - 24845481
Alignment:
Q  94 atcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaaataacacg-atacaaagtgtccaaaatctcttcacttgcctg 192  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24845260 atcgaatcgagtcgagctcagacgagttcaatttgactcgactcatttgcagccctaaataacacggatacaaagtgtccaaaatctcttcacttgcctg 24845359  T
Q  193 cagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttcaaactgtcatgtgttaaatactttagtac 292  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  24845360 cagtaagaaccttgcatctcaaatgtgtcaactttgtagcaactcaccatcac-tatgctga-cctttttcaaactgtcatgtgttaaatactttagtac 24845457  T
Q  293 ttagtgggtgctcattgagtgagg 316  Q
    ||| ||||||||||||||||||||    
T  24845458 ttactgggtgctcattgagtgagg 24845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 33084251 - 33084403
Alignment:
Q  163 caaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgacccttttt 262  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  ||| | |||||||  ||||||||||| |||| || ||||||||| |||     
T  33084251 caaagtgtccaaaatctcttcacttgcctgcattaagaaccttgcatcttcaatttttcaacttctttgcaactcacaatca-ttgtgctgacccctttc 33084349  T
Q  263 caaactgtcatgtgttaaatactttagtacttagtgggtgctcattgagtgagg 316  Q
    |||||||||| ||||| |||||||| || || ||||| || || |||| |||||    
T  33084350 caaactgtcacgtgttgaatactttggttctcagtggttgttctttgattgagg 33084403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 36538157 - 36538077
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||| ||   ||| |||||||| ||||| ||| |||||||  ||||||||||||||||||||||| || |||||    
T  36538157 gagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcagttcgactcgactcatttccagcccta 36538077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 33830949 - 33830890
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||||||| ||||| ||| |||||||  |||| |||||||||||||||||| ||||||||    
T  33830949 cttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccaacccta 33830890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 11027335 - 11027286
Alignment:
Q  102 gagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    ||||||||||||||| |||||  ||||||||||||||||| || ||||||    
T  11027335 gagtcgaactcagacaagttcgattcgactcgactcatttccagccctaa 11027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 26435826 - 26435773
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttca 144  Q
    |||||||||||||| ||| |||||||   ||| |||||||||||||||||||||    
T  26435826 cttatcgaatcgagccgagctcagacagattcggttcgactcgactcattttca 26435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 18667184 - 18667124
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||||||| ||||| | | |||||||||||||  |||||||||| |||||| |||||||||    
T  18667184 cttatcgagtcgagccaagctcagacgagttcgattcgactcgattcatttccaaccctaa 18667124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 8356196 - 8356070
Alignment:
Q  167 gtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttcaaa 266  Q
    |||||||||||||||||| || |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  8356196 gtgtccaaaatctcttcaatttcctgcattaagaactttgcatctcgaatgtgtcaactttgttgcaactcaccatcac-tatgccgaccctttttcaaa 8356098  T
Q  267 ctgtcatgtgttaaatactttagtactt 294  Q
    |||||||| |||||||||||| ||||||    
T  8356097 ctgtcatgagttaaatactttggtactt 8356070  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 8354696 - 8354612
Alignment:
Q  162 acaaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcact 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354696 acaaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcact 8354612  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 43144555 - 43144427
Alignment:
Q  167 gtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttcaaa 266  Q
    ||||||||||||||| | |||||||||| ||||||| ||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  43144555 gtgtccaaaatctctacgcttgcctgcattaagaactttgtatctcaaatatgtcaactttgttgcaacacaccatcac-tatgctgaccctttttcaaa 43144457  T
Q  267 ctgtcatgtgttaaatactttagtacttag 296  Q
    |||||||| |||||||| ||| ||||||||    
T  43144456 ctgtcatgagttaaataatttggtacttag 43144427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 8036098 - 8035966
Alignment:
Q  151 aataacacg-atacaaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttat 249  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||| ||||||||||||||| |||| || |    
T  8036098 aataacacggatacaaagtgtccaaaatctcttcacttgcctgcattaagaaccttgcatcttaaatatttcaagtttgttgcaactcacaatca-ttgt 8036000  T
Q  250 gctgaccctttttcaaactgtcatgtgttaaata 283  Q
    |||||||| |||  ||||||||||||||| ||||    
T  8035999 gctgacccctttcaaaactgtcatgtgttgaata 8035966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 8359247 - 8359126
Alignment:
Q  165 aagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttca 264  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| |||||  ||||||||||| |||||||| ||||| | ||||||||| ||||||    
T  8359247 aagtgtccaaaatctcttcacctgcctgcattaagaaccttgcatcttaaatgcttcaactttgttacaactcactatcac-tgtgctgaccccttttca 8359149  T
Q  265 aactgtcatgtgttaaatacttt 287  Q
    |||||||||||||| || |||||    
T  8359148 aactgtcatgtgttgaacacttt 8359126  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 8411099 - 8411211
Alignment:
Q  163 caaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgacccttttt 262  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||| |||| | |||||||||||||||||||| |||| || |||||||||||||     
T  8411099 caaagtgtccaaaatctcttcacttacctgcattaagaaccttgcatcttaaatttttcaactttgttgcaactcacaatca-ttgtgctgacccttttc 8411197  T
Q  263 caaactgtcatgtg 276  Q
    |||| |||||||||    
T  8411198 caaaatgtcatgtg 8411211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 287
Target Start/End: Original strand, 8416703 - 8416824
Alignment:
Q  165 aagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttca 264  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||| | | |||||||||||||||||| |||| || |||||| || ||||||    
T  8416703 aagtgtccaaaatctcttcacttacctgcattaagaaccttgcatcttaaattttttaactttgttgcaactcacgatca-ttgtgctgagcccttttca 8416801  T
Q  265 aactgtcatgtgttaaatacttt 287  Q
    |||||||||||| | ||||||||    
T  8416802 aactgtcatgtgctgaatacttt 8416824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 8041499 - 8041380
Alignment:
Q  163 caaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgacccttttt 262  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||| || | | |||  ||||||||||||||| |||| || |||||||||||||     
T  8041499 caaagtgtccaaaatctcttcacttacctgcattaagaaccttgcatcttaattttttcagatttgttgcaactcacaatca-ttgtgctgacccttttc 8041401  T
Q  263 caaactgtcatgtgttaaata 283  Q
    |||||||||| ||||| ||||    
T  8041400 caaactgtcacgtgttgaata 8041380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 9138683 - 9138560
Alignment:
Q  163 caaagtgtccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgacccttttt 262  Q
    ||||||||||||||||||||||| | || ||| ||||||||||||||||  ||||  || ||||||||||||||||| ||||| | ||||||||| |||     
T  9138683 caaagtgtccaaaatctcttcacataccagcattaagaaccttgcatcttcaatggttccactttgttgcaactcacgatcac-tgtgctgacccctttc 9138585  T
Q  263 caaactgtcatgtgttaaatacttt 287  Q
    |||||||||| ||||| ||||||||    
T  9138584 caaactgtcacgtgttgaatacttt 9138560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 21436400 - 21436307
Alignment:
Q  57 tcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||| |||  ||||||||||| || | ||| |||||||| ||||| |||||||||||  |||| |||||||||||||||||| ||||||||    
T  21436400 tcgaattcgagccgagtttcgagccgaatcaattcttatcgagtcgagccgaactcagacaggttcggttcgactcgactcatttccaacccta 21436307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 43386619 - 43386534
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||| ||||||| ||| |||  ||| |||||||| ||||||||| |||||||  ||||||||||||||||||||||| || |||||    
T  43386619 gagtcgagtttcaagccgagcaaattcttatcgagtcgagtcgagctcagacaggttcagttcgactcgactcatttccagcccta 43386534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 12790227 - 12790286
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||||||||||||| ||| |||||||  |||| ||||||||||||||||||||| |||||    
T  12790227 cttatcgaatcgagccgagctcagacaggttcggttcgactcgactcattttcagcccta 12790286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 8404062 - 8404174
Alignment:
Q  174 aaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttcaaactgtcat 273  Q
    |||||| |||| ||||||| | ||||||| || |||||  |||  ||||||||||||||||||||| ||||| |||| ||| || |||||||||  ||||    
T  8404062 aaatcttttcatttgcctgtattaagaactttacatcttgaatacgtcaactttgttgcaactcacgatcac-tatgttgatcccttttcaaaccttcat 8404160  T
Q  274 gtgttaaatacttt 287  Q
    | ||| ||||||||    
T  8404161 gcgttgaatacttt 8404174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 52813052 - 52812975
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcatttt 142  Q
    |||| ||||||| ||| |||  ||| |||||||| ||||| |||||||||||  |||| |||||||||||||||||||    
T  52813052 gagtcgagtttcaagccgagcaaattcttatcgagtcgagccgaactcagacaggttcggttcgactcgactcatttt 52812975  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 38493680 - 38493735
Alignment:
Q  86 taatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||| |||||||  |||||||||||||||||||||||  ||||||| |||||||||    
T  38493680 taattcttatcgggtcgagtcgaactcagacgagttcgattcgactagactcattt 38493735  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 1167772 - 1167829
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccc 148  Q
    ||||| ||||| ||| ||||||| || ||||| |||||||||||||||||| ||||||    
T  1167772 cttattgaatcaagttgaactcaaacaagttcggttcgactcgactcatttccaaccc 1167829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 1170254 - 1170311
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccc 148  Q
    ||||| ||||| ||| ||||||| || ||||| |||||||||||||||||| ||||||    
T  1170254 cttattgaatcaagttgaactcaaacaagttcggttcgactcgactcatttccaaccc 1170311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 51994168 - 51994083
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||| ||||||||||||||   ||| |||| ||| ||||||||| ||||||||  |||  ||||||||||||||||| || |||||    
T  51994168 gagtcgagtttcgagctgaaccaattcttaacgagtcgagtcgagctcagacggattcgattcgactcgactcatttccagcccta 51994083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 7505509 - 7505433
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||| ||||||||||| || | ||| |||||||| ||||| ||| ||||||| |||||   ||||||||||||||||    
T  7505509 gagtcgagtttcgagccgaatcaattcttatcgagtcgagccgagctcagacaagttcgactcgactcgactcattt 7505433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 19850212 - 19850132
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||| ||   |||| ||||||| ||||| ||| |||||||  |||| |||||||||||||||||| || |||||    
T  19850212 gagtttcgagccgaaccaatgtttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagcccta 19850132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 28266832 - 28266880
Alignment:
Q  103 agtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||||| |||||||  ||||| |||||||||||||||||||| ||||||    
T  28266832 agtcgagctcagacatgttcaattcgactcgactcattttcagccctaa 28266880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 48151821 - 48151869
Alignment:
Q  99 atcgagtcgaactcagacgagttcagttcgactcgactcattttcaacc 147  Q
    |||||||||| |||||| || ||| ||| ||||||||||||||||||||    
T  48151821 atcgagtcgagctcagatgaattcggtttgactcgactcattttcaacc 48151869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 50605535 - 50605455
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||| ||   ||| |||||||| ||||| ||| |||||||  |||| |||||||||||||||||| | ||||||    
T  50605535 gagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccgacccta 50605455  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 4442042 - 4442126
Alignment:
Q  57 tcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    ||||| |||||||||||||||||| || ||||| |||||||| |||||| || |||||||  |||| ||||||||||||||||||    
T  4442042 tcgaacttgagttgagtttcgagccgaattaattcttatcgagtcgagttgagctcagacaggttcggttcgactcgactcattt 4442126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 6998661 - 6998585
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||| ||||||||||| |||  ||| |||||||| ||||| ||| |||||||  |||| ||||||||||||||||||    
T  6998661 gagtcgagtttcgagccgagcaaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcattt 6998585  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 9413345 - 9413404
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||| || |||||    
T  9413345 cttatcgagtcgagtcgagctcagacaagttcagttcgactcgactcatttccagcccta 9413404  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 5476606 - 5476722
Alignment:
Q  170 tccaaaatctcttcacttgcctgcagtaagaaccttgcatctcaaatgtgtcaactttgttgcaactcaccatcacttatgctgaccctttttcaaactg 269  Q
    |||||||||||| || ||||||||| ||||||| || |||||  |||  ||||||||||||||||||| | ||||| |||| ||| || |||||||||      
T  5476606 tccaaaatctctacatttgcctgcattaagaactttacatcttgaatacgtcaactttgttgcaactcgcgatcac-tatgttgatcccttttcaaacct 5476704  T
Q  270 tcatgtgttaaatacttt 287  Q
    ||||| ||| ||||||||    
T  5476705 tcatgcgttgaatacttt 5476722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 8390177 - 8390244
Alignment:
Q  49 ggtttgaatcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagac 116  Q
    |||||| |||||||| ||||||||||||||||||||   || |||||||| ||||||||| |||||||    
T  8390177 ggtttgtatcgaattcgagttgagtttcgagctgagccgattcttatcgagtcgagtcgagctcagac 8390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 23236831 - 23236908
Alignment:
Q  59 gaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||||||||| ||||||||||| ||| |||| |||||||| |||||     |||||| |||||| ||||||||||||||||||    
T  23236831 gaatttgagtcgagtttcgagccgagctaattcttatcgagtcgag-----ctcagatgagttcggttcgactcgactcattt 23236908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 5776625 - 5776706
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    ||||||||||||||  |||| |||||||| ||||| ||| ||||| |  |||| |||||||||||||||||| || ||||||    
T  5776625 gagtttcgagctgaactaattcttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagccctaa 5776706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 41449203 - 41449150
Alignment:
Q  99 atcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaaa 152  Q
    |||||||||| || ||| |||||| ||||||||||||||||||||| |||||||    
T  41449203 atcgagtcgagcttagatgagttcggttcgactcgactcattttcagccctaaa 41449150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 33124149 - 33124104
Alignment:
Q  99 atcgagtcgaactcagacgagttcagttcgactcgactcattttca 144  Q
    |||||||||| |||||||||||||  || |||||||||||||||||    
T  33124149 atcgagtcgagctcagacgagttcgatttgactcgactcattttca 33124104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 17026053 - 17026129
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||| ||||||||||| ||   ||| |||||||| ||||||||| ||||||| |||||   ||||||||||||||||    
T  17026053 gagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacaagttcgactcgactcgactcattt 17026129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 33172197 - 33172272
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||| |||  ||| ||||||||||||||     |||||| |||||| |||||||||||||||||| || |||||    
T  33172197 gagtttcgagccgagccaattcttatcgaatcgag-----ctcagatgagttcggttcgactcgactcatttccagcccta 33172272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 33895975 - 33895916
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||| || ||||||||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  33895975 cttattgagtcgagtcgagctcagacaagttcggttcgacttgactcattttcaacccta 33895916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 7029215 - 7029135
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||||||   ||| |||||||| |||||||||||||||| ||||||   | |||||||||||||| || |||||    
T  7029215 gagtttcgagctgaacaaattcttatcgagtcgagtcgaactcagatgagttcgactggactcgactcatttccagcccta 7029135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 7521824 - 7521875
Alignment:
Q  99 atcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||||||| | ||||||  ||||| |||||||||||||||||||||||||||    
T  7521824 atcgagtctagctcagataagttcggttcgactcgactcattttcaacccta 7521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 39133858 - 39133777
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    ||||||||||| ||   ||| |||||||| |||||  || |||||||  |||||||||||||||| ||||||||| ||||||    
T  39133858 gagtttcgagccgaaccaattcttatcgagtcgagctgagctcagacaggttcagttcgactcgaatcattttcagccctaa 39133777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 19561491 - 19561543
Alignment:
Q  99 atcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||||||||| ||||||||| ||||  |||||||||||||||| || ||||||    
T  19561491 atcgagtcgagctcagacgaattcaactcgactcgactcatttccagccctaa 19561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 54394122 - 54394182
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||| ||| |||||| ||||||||||  ||||  ||||||||||||||||| |||||||||    
T  54394122 cttaacgagtcgagttgaactcagacaggttcgattcgactcgactcatttccaaccctaa 54394182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 31868990 - 31868894
Alignment:
Q  49 ggtttgaatcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccc 148  Q
    |||||| |||||| | |||| ||||||||||| |||| ||| ||||| || ||||| ||| ||||||||||||      |||||||||||||||||||||    
T  31868990 ggtttgtatcgaactcgagtcgagtttcgagccgagtcaattcttattgagtcgagccgagctcagacgagttt-----gactcgactcattttcaaccc 31868896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 32179413 - 32179332
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    ||||||||||| ||   ||| |||||||||||||| ||| ||||| | ||||| |||||||||||||||||| || ||||||    
T  32179413 gagtttcgagccgaaccaattcttatcgaatcgagccgagctcaggcaagttcggttcgactcgactcatttccagccctaa 32179332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 36118325 - 36118229
Alignment:
Q  50 gtttgaatcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccct 149  Q
    ||||| |||||| ||||||||||||| ||||||| | ||| |||     |||||||||| ||||||  ||||| | ||||||||||||||||||| ||||    
T  36118325 gtttgtatcgaacttgagttgagttttgagctgaatcaattctt-----atcgagtcgagctcagataagttcggatcgactcgactcattttcagccct 36118231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 48575817 - 48575877
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||||||| ||||||||| |||||||  ||||  ||||| |||||||||||||||||||||    
T  48575817 cttatcgagtcgagtcgagctcagacatgttcgattcgattcgactcattttcaaccctaa 48575877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 6474 - 6533
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    |||||||| ||||||||| ||||| |  ||||| |||||||||||||||||||| |||||    
T  6474 cttatcgagtcgagtcgagctcaggcaggttcaattcgactcgactcattttcagcccta 6533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 26299531 - 26299445
Alignment:
Q  65 gagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||| ||||||||||| ||   ||| |||||||| |||| |||| ||||||| ||||    ||||||||||||||||||||||||||    
T  26299531 gagtcgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcagacaagtttgactcgactcgactcattttcaaccctaa 26299445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 1841023 - 1841108
Alignment:
Q  56 atcgaatttgagttgagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattt 141  Q
    |||||| | |||| ||||||||||| ||   ||| |||||||| ||||||||| |||||||  |||  ||||||||||||||||||    
T  1841023 atcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacaggtttggttcgactcgactcattt 1841108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 18879679 - 18879626
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttca 144  Q
    |||||||| ||||| |||||||||||   ||| |||||||||||||||||||||    
T  18879679 cttatcgagtcgagccgaactcagacagattcggttcgactcgactcattttca 18879626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 3805433 - 3805513
Alignment:
Q  70 gagtttcgagctgagttaatgcttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaacccta 150  Q
    ||||||||||| ||   ||| |||||||| ||||| ||| |||||||  |||| |||||||||||||||||| || |||||    
T  3805433 gagtttcgagccgaaccaattcttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagcccta 3805513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 17066317 - 17066258
Alignment:
Q  91 cttatcgaatcgagtcgaactcagacgagttcagttcgactcgactcattttcaaccctaa 151  Q
    |||||||||| | |||||||||||||||||||  || |||||||||||||| ||| |||||    
T  17066317 cttatcgaattg-gtcgaactcagacgagttcgattagactcgactcatttccaatcctaa 17066258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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