View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_high_34 (Length: 269)
Name: NF13177_high_34
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 55082735 - 55082478
Alignment:
| Q |
19 |
catccatgggtggtcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaa |
118 |
Q |
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| T |
55082735 |
catccatgggtggtcttacatacaacttctcgcttgaacggccaataattaattaattagtgataacatatagcacaataggattgactagttgagacaa |
55082636 |
T |
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| Q |
119 |
cattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctga-----------------aatggaactatattcttttgaat |
201 |
Q |
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| T |
55082635 |
cattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatgagaacctaacttcaatgaaactatattcttttgaat |
55082536 |
T |
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| Q |
202 |
ctatctgttgttttttgcgtcgtcttagatgaccgtgtgatgaatcaaacgtcctatg |
259 |
Q |
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| T |
55082535 |
ttatctgttgttttttgcgtcgtcttagatgaccgtgtgatgaatcaaacgtcctatg |
55082478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 38035286 - 38035382
Alignment:
| Q |
86 |
atatagcacaataggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg |
182 |
Q |
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| T |
38035286 |
atataggacaataggattgaccaattgagacaatttttgtacatcagcaatttttttgtcaattttgatgtttcctcttaagtggaaatcttaaatg |
38035382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 50913649 - 50913797
Alignment:
| Q |
32 |
tcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtacatca |
131 |
Q |
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| T |
50913649 |
tcttacatacagcttctcacttgaacagactataattcatgtatgagtgataacata--ggatagtaggactgactagttgagacaagttttgtacatcg |
50913746 |
T |
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| Q |
132 |
ggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg |
182 |
Q |
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| T |
50913747 |
gaaatttctttgtcaattttgatgcttcctcttaagtggaaatcttaaatg |
50913797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 38032518 - 38032596
Alignment:
| Q |
97 |
taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc |
175 |
Q |
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| T |
38032518 |
taggattgaccagttgagacaatttttgtacatcagaaatttctttgtcaattttgatgtttcctcttaggtggaaatc |
38032596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 38038783 - 38038861
Alignment:
| Q |
97 |
taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc |
175 |
Q |
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| T |
38038783 |
taggattgaccagttgagacaatttttgtacatcagcaacttctttgtcaattttgatgtttcctcttaagttgaaatc |
38038861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 38027691 - 38027767
Alignment:
| Q |
97 |
taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaa |
173 |
Q |
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| T |
38027691 |
taggattgaccagttgagataattttcgtacatcagcaatttctttatcaattttgatgtttcctcttatgtggaaa |
38027767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 38035208 - 38035248
Alignment:
| Q |
32 |
tcttacatacaacttctcgcttgaacggtcaataattaatt |
72 |
Q |
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| T |
38035208 |
tcttacatacagcttctctcttgaacggtctataattaatt |
38035248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 21608493 - 21608571
Alignment:
| Q |
97 |
taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc |
175 |
Q |
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| T |
21608493 |
taggattgaccagttgagacattttttgtacatcagtaatttctttgtcaattttgatgtttcctcttatgttgaaatc |
21608571 |
T |
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