View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_high_7 (Length: 544)
Name: NF13177_high_7
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Complemental strand, 49253616 - 49253101
Alignment:
| Q |
19 |
aatttagtttgaaacttatctatcttggattttcaatgatgttgtgcagtctacaaaaccaggggagccattttgggagagtccctggggtcctggaaga |
118 |
Q |
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| T |
49253616 |
aatttagtttgaaacttatctatcttggattttcaatgatgttgtgcagtctacaaaaccaggggagccattttgggagagtccctggggtcctggaaga |
49253517 |
T |
|
| Q |
119 |
cctgggtggcatattgaatgcagtgctatgagtgcagcttatcttggttactcttttgacatccacggtggagggattgaccttgtatttcctcaccatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49253516 |
cctgggtggcatattgaatgcagtgctatgagtgcagcttatcttggttactcttttgacatccacggtggagggattgaccttgtatttcctcaccatg |
49253417 |
T |
|
| Q |
219 |
aaaatgaaattgctcagagttgtgctgcttgtagtaaaagtgatattagtgtttggatgcacaatggttttgtcaccattgactcagtgaagatgtctaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49253416 |
aaaatgaaattgctcagagttgtgctgcttgtagtaaaagtgatattagtgtttggatgcacaatggttttgtcaccattgactcggtgaagatgtctaa |
49253317 |
T |
|
| Q |
319 |
atctctgggaaactttttcacgatacggcaggtaatgcagccctgattgtttagacttaatttctttaagcttattgtttagtatctttcacaaggaccc |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49253316 |
atctctgggaaactttttcacaatacggcaggtaatgcagccctgattgtttagacttaatttctttaagcttattgtttagtatctttcacaaggaccc |
49253217 |
T |
|
| Q |
419 |
aacatttccatctgttgttctaccactcaaagggataaattcttattccacaaatatttcatgttggcaggttgtagatgtttaccatccgttggctttg |
518 |
Q |
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| T |
49253216 |
aacatttccatccgttgttctaccactcaaagggataaattcttattccacaaatatttcatgttggcaggttgtagatgtttaccatccgttggctttg |
49253117 |
T |
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| Q |
519 |
agatattttttgatga |
534 |
Q |
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|||||||||||||||| |
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| T |
49253116 |
agatattttttgatga |
49253101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 28959525 - 28959408
Alignment:
| Q |
44 |
tggattttcaatgatgttgtgcagtctacaaaaccaggggagccatttt-gggagagtccctggggtcctggaagacctgggtggcatattgaatgcagt |
142 |
Q |
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||||||||||||| || |||| | ||| |||| ||| ||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
28959525 |
tggattttcaatgttgctgtgtaatctgcaaagccaatggagccatttttgggagagtcc-tggggtcttggaagacctgg-----atattgaatgcagt |
28959432 |
T |
|
| Q |
143 |
gctatgagtgcagcttatcttggt |
166 |
Q |
| |
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|||| ||| |||||||| ||||| |
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| T |
28959431 |
gctacaagtacagcttattttggt |
28959408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 26715070 - 26715131
Alignment:
| Q |
92 |
tgggagagtccctggggtcctggaagacctgggtggcatattgaatgcagtgctatgagtgc |
153 |
Q |
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||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
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| T |
26715070 |
tgggacagtccatggggtcccggaaggcctggatggcacattgaatgcagtgcaatgagtgc |
26715131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 49795862 - 49795801
Alignment:
| Q |
92 |
tgggagagtccctggggtcctggaagacctgggtggcatattgaatgcagtgctatgagtgc |
153 |
Q |
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||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
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| T |
49795862 |
tgggacagtccttggggtcccggaaggcctggatggcacattgaatgcagtgcaatgagtgc |
49795801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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