View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_10 (Length: 457)
Name: NF13177_low_10
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 37463628 - 37464055
Alignment:
| Q |
19 |
gtaaagatgctgatatatctgaagaggcaggagaaattcaggttactgtgtgtagtgttggatattattattatgtagccttgccttcatgcacaatatt |
118 |
Q |
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| T |
37463628 |
gtaaagatgctgatatatctgaagaggcaggagaaattcaggttactgtgtgtagtgttggatattattattatgtagccttgccttcatgcacaatatt |
37463727 |
T |
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| Q |
119 |
gaagacaaagaattccaaatataatgcaattaagccggtgtatatgtcactgccacacaggattatataactagtttagaacagctggcgaaaccgaagg |
218 |
Q |
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| T |
37463728 |
gaagacaaagaattccaaatataatgcaattaagccggtgtatatgtcactgccacacaggattatataactagtttagaacagctcgcgaaaccgaagg |
37463827 |
T |
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| Q |
219 |
tgctggatttgtttcaaagaagatatttgcgctcactcacggtatgtagctataattccactctggatatcagttcattttcttcaagaatgtgtacggt |
318 |
Q |
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| T |
37463828 |
tgctggatttgtttcaaagaagatatttgcgctcactcacggtatgtagctataattccactctggatatcagttcattttcttcaagaatgtgtacgat |
37463927 |
T |
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| Q |
319 |
ggactactatgttgagaggtggaaaataaagtattggttgaatatgatagtttattttccacttatcatgttactattctattaagtaaatctgaagtga |
418 |
Q |
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| T |
37463928 |
ggactactatgttgagaggtggaagataaagtattggttgaatatgatagtttattttccacttatcatgttactattctattaagcaaatctgaagtga |
37464027 |
T |
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| Q |
419 |
tttccattcaaaattttcatcttcctat |
446 |
Q |
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| T |
37464028 |
tttccattcaaaattttcatcttcctat |
37464055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 277 - 446
Target Start/End: Original strand, 49021001 - 49021169
Alignment:
| Q |
277 |
cactctggatatcagttcattttcttcaagaatgtgtacggtggactactatgttgagaggtggaaaataaagtattggttgaatatgatagtttatttt |
376 |
Q |
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| T |
49021001 |
cactctagatagtagttcattctcttgaagaatgtgtgtggtggactactaggttgagaggtggaaaataaagtagtggttgaatatgatagtttatttt |
49021100 |
T |
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| Q |
377 |
ccacttatcatgttactattctattaagtaaatctgaagtgatttccattcaaaattttcatcttcctat |
446 |
Q |
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| T |
49021101 |
ccagttctcatgttattatt-tattaagcaaatctgaactcatttccattcaaaattttcatcttcctat |
49021169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 37583915 - 37583767
Alignment:
| Q |
157 |
tgtatatgtcactgccacacaggattatataactagtttagaacagctggcgaaaccgaaggtgctggatttgtttcaaagaagatatttgcgctcactc |
256 |
Q |
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| T |
37583915 |
tgtatctgtcactgccacacaggattatataactagtttagaacggctcgcaaaaccgaaggtgctggatttgtttcaaaaaagatatttgcgctgagtc |
37583816 |
T |
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| Q |
257 |
acggtatgtagctataattccactctggatatcagttcattttcttcaa |
305 |
Q |
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| T |
37583815 |
acggcaggtaactaaaattccacttttgatatcagttccttttcttcaa |
37583767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 37590302 - 37590155
Alignment:
| Q |
155 |
ggtgtatatgtcactgccacacaggattatataactagtttagaacagctggcgaaaccgaaggtgctggatttgtttcaaagaagatatttgcgctcac |
254 |
Q |
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| T |
37590302 |
ggtgtatctttcactgccacacaggattatataactagtttagaacggctcgcaaaaccgaatgggctggatttgtttcagaaaagatatttgcgctcac |
37590203 |
T |
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| Q |
255 |
tcacggtatgtagctataattccactctggatatcagttcattttctt |
302 |
Q |
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| T |
37590202 |
tcacggtaggtaattataattccacttttgatattagttcgttttctt |
37590155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 49020954 - 49021003
Alignment:
| Q |
209 |
aaaccgaaggtgctggatttgtttcaaagaagatatttgcgctcactcac |
258 |
Q |
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| T |
49020954 |
aaaccaaaggtgctggatttatttcaaagaagatatttgcgctcactcac |
49021003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 37590109 - 37590060
Alignment:
| Q |
393 |
tattctattaagtaaatctgaagtgatttccattcaaaattttcatcttc |
442 |
Q |
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| T |
37590109 |
tattgtattaaggaaatctcatgtgatttccaatcaaaattttcatcttc |
37590060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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