View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13177_low_11 (Length: 435)
Name: NF13177_low_11
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 31407751 - 31407999
Alignment:
| Q |
8 |
agattatactggtaacaagctctttcaactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcacaaagctttgtcctctgaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31407751 |
agattatactggtaacaagctctttcaactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcacaaagctttgtcctctgaat |
31407850 |
T |
|
| Q |
108 |
atgtggctgttgagatccaatgattagtttgatcaaccaatgcattgttttaacacacaaaaaatgactacattctaacatggcgaaagtttctataaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31407851 |
atgtggctgttgagatccaatgattagtttgatcaaccaatgcattgttttaacaca-aaaaaatgactacattctaacatggcgaaagtttctataaaa |
31407949 |
T |
|
| Q |
208 |
acagattagtagttatgtgaatacttagatcggtgccaccatgccaagaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31407950 |
acagattagtagttatgtgaatacttagatcggtgccaccatgccaagaa |
31407999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 31408065 - 31408235
Alignment:
| Q |
256 |
aactgaaataaattactccttatattgaattcaacatatacctgtggtaaactaaaggcagtgttgttgttccccatcatagccagcgagtcccggatct |
355 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31408065 |
aactgaaataaattactccctatattgaattcaacacatacctgtggtaaactaaaggcagtgttgttgttccccatcatagccagcgagtcccggatct |
31408164 |
T |
|
| Q |
356 |
gattaacctgaagaaatgaactttcagtataaattttcagttctagaatagcaatagttcactgataattg |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31408165 |
gattaacctgaagaaatgaactttcagtataaattttcagttccagaatagcaatagttcactgataattg |
31408235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 38493094 - 38492985
Alignment:
| Q |
9 |
gattatactggtaacaagctctttcaactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcacaaagctttgtcctctgaata |
108 |
Q |
| |
|
||||||||| | |||||||||||| | || ||||||| || | |||||| | ||||||| || |||| |||| |||||||||||||||| ||| | | |
|
|
| T |
38493094 |
gattatactagaaacaagctcttttagcttctcccttttcttcacatatgatggatcgagctccccatccttcaagtcacaaagctttgtccgctggaga |
38492995 |
T |
|
| Q |
109 |
tgtggctgtt |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
38492994 |
tgtggctgtt |
38492985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University