View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_13 (Length: 423)
Name: NF13177_low_13
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 39 - 400
Target Start/End: Original strand, 14457228 - 14457589
Alignment:
| Q |
39 |
ctggtagtttatccgttataagttcactgatggataataagtttatatcgaattacttatgagttagtttattatccgctatgttttgccaaatagagct |
138 |
Q |
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| T |
14457228 |
ctggtagtttatccgttataagttcacttatggataataagtttatatcgaattacttatgagttagtttattatccgctgtgttttgccaaatagagct |
14457327 |
T |
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| Q |
139 |
ctaagacactctcgctaataaataattagaacattttatttcttttacaattttatgaatcaatttctctaagagaacgcatgattgttaattaaattac |
238 |
Q |
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| T |
14457328 |
ctaagacactctcgctaataaataattagaacattttatttcatttacaattttatgaataaatttctctaagagaacacatgattgttaattaaattac |
14457427 |
T |
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| Q |
239 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
338 |
Q |
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| T |
14457428 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
14457527 |
T |
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| Q |
339 |
gtgtgttttatgaggtgattgataataataactaatnnnnnnntgtttagggctaaacccta |
400 |
Q |
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| T |
14457528 |
gtgtgttttatgaggtgattgataataataactaataaaaaaatgtttagggctaaacccta |
14457589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14456031 - 14456070
Alignment:
| Q |
1 |
ggttttaaacacttgggtgattaaaattgttgtgcttact |
40 |
Q |
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| T |
14456031 |
ggttttaaaaacttgggtgattaaaattgttgtggttact |
14456070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49235199 - 49235241
Alignment:
| Q |
1 |
ggttttaaacacttgggtgattaaaattgttgtgcttactggt |
43 |
Q |
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| T |
49235199 |
ggttttaaaaacttgggtgattaaaattgttgtgcttactggt |
49235241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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