View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_15 (Length: 414)
Name: NF13177_low_15
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 30432745 - 30432347
Alignment:
| Q |
18 |
actaatggtaatataaatttttcctatgacttatttaacatcaagggaaataaataatttaactttggtgtctattacagtccataagacctgtgcgc-- |
115 |
Q |
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| T |
30432745 |
actaatggtaatataaatttttcctatgacttatttaacatcaagggaaataaataatttaactttggtgtctattacagtccataagacctgtgcgacg |
30432646 |
T |
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| Q |
116 |
-atcaaataactaatgtcggcatgtcgggggaacaacggttcatggtcactttttgttgtcatgtgagataatagttgcacatgccgtgtttttggtcca |
214 |
Q |
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| T |
30432645 |
tatcaaataactaatgtcggcatgtcgggg-aacaacggttcatgctcactttttgttgtcatgtgagataatagttgcacatgccgtgtttttggtcca |
30432547 |
T |
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| Q |
215 |
acacaagtccaagaaggagcccagaattgggcgttcccatcaccaaaaaacgaaactctttgagaattacgtcgattctttaaagttctggaggcacaag |
314 |
Q |
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| T |
30432546 |
acacaagtccaagaaggagcccagaattgggtgttcccttcaccaaaaaacgaaactctttgagaattaagtcgattctttaaagttctggaggcacaag |
30432447 |
T |
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| Q |
315 |
tacgtggtgcttcgtcctatgactcggcgcgcccacgagtgcacatgtaaggtccttgaaggacatccggaggcgcactcagattctgaagctccagtct |
414 |
Q |
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| T |
30432446 |
tacgtggtgcatcgtcctatgactcggcgcgcccacgagtgcatatgtaaggtccttgaaggacatccggaggcgcactcagattctgaagctccagtct |
30432347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 15515397 - 15515356
Alignment:
| Q |
20 |
taatggtaatataaatttttcctatgacttatttaacatcaa |
61 |
Q |
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| T |
15515397 |
taatggtaatacaattttttgctatgacttatttaacatcaa |
15515356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 15840357 - 15840398
Alignment:
| Q |
20 |
taatggtaatataaatttttcctatgacttatttaacatcaa |
61 |
Q |
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| T |
15840357 |
taatggtaatacaattttttgctatgacttatttaacatcaa |
15840398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 24260134 - 24260215
Alignment:
| Q |
33 |
aatttttcctatgacttatttaacatcaagggaaataaataatttaactttggtgtctattacagtccataagacctgtgcg |
114 |
Q |
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| T |
24260134 |
aattttttctatggcttatttaacatcaagggaaataaataatttaactttgatgtctattatagtctataagacccgtgcg |
24260215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 27070734 - 27070787
Alignment:
| Q |
22 |
atggtaatataaatttttcctatgacttatttaacatcaagggaaataaataat |
75 |
Q |
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| T |
27070734 |
atggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatataat |
27070787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 27150820 - 27150873
Alignment:
| Q |
22 |
atggtaatataaatttttcctatgacttatttaacatcaagggaaataaataat |
75 |
Q |
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| T |
27150820 |
atggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatataat |
27150873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 54932818 - 54932743
Alignment:
| Q |
33 |
aatttttcctatgacttatttaacatcaagggaaataaataatttaactttggtgtctattacagtccataagacc |
108 |
Q |
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| T |
54932818 |
aattttttctatggcttatttaacattaagggaaataaataatttaactttgatgtctattatagtctataagacc |
54932743 |
T |
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