View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_16 (Length: 408)
Name: NF13177_low_16
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 8259434 - 8259814
Alignment:
| Q |
10 |
aatatggtggcatctttcacctacgcatgggattcctccacatggtagctatttccgacgcggatgccgcacgacaagttctgcaagttcaagacaacat |
109 |
Q |
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| T |
8259434 |
aatatggtggcatctttcacctacgcatgggattcctccacatggtagctatttccgacgcggatgccgcacgacaagttctgcaagttcaagacaacat |
8259533 |
T |
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| Q |
110 |
cttttccaaccggccagcaactgtagccattaaatacctaacttacgaccgtgctgacatggcgtttgctcactatggtcccttttggcgccagatgcga |
209 |
Q |
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| T |
8259534 |
cttttccaaccggccagcaactgtagccattaaatacctaacttacgaccgtgctgacatggcgtttgctcactatggtcccttttggcgccagatgcga |
8259633 |
T |
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| Q |
210 |
aaactctgcgtgatgaagcttttcagccgtaaacacgcagagtcttggcaatctgttagagacgaggttgactatgctgtccgaactgtttcagacaaca |
309 |
Q |
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| T |
8259634 |
aaactctgcgtgatgaagcttttcagccgtaaacacgccgagtcttggcaatctgttagagacgaggttgactatgctgtccgaactgtttcagacaaca |
8259733 |
T |
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| Q |
310 |
taggcaaccctgtgaacattggagaactagtattcaacttaaccaaaaacattatatatctagcggctttcgggtcgagct |
390 |
Q |
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| T |
8259734 |
taggcaaccctgtgaacattggagaactagtattcaacttaaccaaaaacattatatatcgagcggctttcgggtcgagct |
8259814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 32316221 - 32316048
Alignment:
| Q |
107 |
catcttttccaaccggccagcaactgtagccattaaatacctaacttacgaccgtgctgacatggcgtttgctcactatggtcccttttggcgccagatg |
206 |
Q |
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| T |
32316221 |
catcttttcaaatcggccagcgacggtagccataagttaccttacttataaccgtgctgacatggcgtttgctcactacggtccattttggcgccagatg |
32316122 |
T |
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| Q |
207 |
cgaaaactctgcgtgatgaagcttttcagccgtaaacacgcagagtcttggcaatctgttagagacgaggttga |
280 |
Q |
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|||||||| || || ||||| || || ||||| |||| ||| ||||| ||||| ||||| | |||||| ||||| |
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| T |
32316121 |
cgaaaactttgtgtcatgaaactctttagccgcaaacgcgctgagtcatggcagtctgtcaaagacgaagttga |
32316048 |
T |
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