View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_18 (Length: 381)
Name: NF13177_low_18
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 36612387 - 36612298
Alignment:
| Q |
177 |
cgccttcaaatacaaagcaatataactcatgtcatagtgttgatgtactttcacatgaaatatattgatcacgtgctcttgatagcgaat |
266 |
Q |
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| T |
36612387 |
cgccttcaaatacaaagcaatacaactcatgtcatagtgttgacgtactttcacatgaaatatattgatcacgtgctcttgatggcgaat |
36612298 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 36610702 - 36610659
Alignment:
| Q |
338 |
cactcccacattgcattcttgatcacatttgttcaattactagc |
381 |
Q |
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| T |
36610702 |
cactcccacattgcattctttatcacatttgttcaattactagc |
36610659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 36610658 - 36610622
Alignment:
| Q |
264 |
aatatagatccacaacactaccaacttgttccacttg |
300 |
Q |
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| T |
36610658 |
aatatagatccacaacactaccaacttgttccacttg |
36610622 |
T |
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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 20873840 - 20873636
Alignment:
| Q |
35 |
agatttggattgataaatgcttcttcgtaagtggttgatgaattttttgttaaaatatcgatgctggtacttcgtatttggttgtttgtgatacggtaaa |
134 |
Q |
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| T |
20873840 |
agatttagattgaaaaacgcttcttcataagtggtagatgaattttttgtgcaaatatagatgctggtacttagtatttggttgtttgtgttatggtaaa |
20873741 |
T |
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| Q |
135 |
tcggactgtaacttgttatctttggaaaagtaattggagtttcgccttcaaatacaaagcaatataactcatgtcatagtgttgatgtactttcacatga |
234 |
Q |
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| T |
20873740 |
ttgattcttaaccttttatctttggagaaaaaattggagtttcaccttctaatacaaagcaatacaactcattccatcgtgtttacgtattttcacatca |
20873641 |
T |
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| Q |
235 |
aatat |
239 |
Q |
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| T |
20873640 |
aatat |
20873636 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 19656858 - 19656796
Alignment:
| Q |
42 |
gattgataaatgcttcttcgtaagtggttgatgaattttttgttaaaatatcgatgctggtac |
104 |
Q |
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| T |
19656858 |
gattgataagagcttcttcataagtggtagatgaattttttgtgcaaatatagatgctagtac |
19656796 |
T |
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