View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_19 (Length: 381)
Name: NF13177_low_19
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 34476292 - 34476643
Alignment:
| Q |
17 |
caatgagagccattgagtttgcaaagttaaaaatttggaataatttgtggttataaatagattcaatgttggtggttagagccttcaaatctacgaacaa |
116 |
Q |
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| T |
34476292 |
caatgagagctattgagtttgcaaagttaaaaaattggaataatttgtggttataaatatattcaatgttggtggttagagccttcaaatctacgaacaa |
34476391 |
T |
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| Q |
117 |
ggtgccttgaggaataagaaacaggtggaataattgtctcatcctgctatctattatgaattttgtggttattcatatttatagggagggtaatacttgt |
216 |
Q |
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| T |
34476392 |
ggtgccttgaggaataagaaacaggtggaataattgtctcatcctgctatctattatgaattttgtggttactcatatttatagggaggataatacttgt |
34476491 |
T |
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| Q |
217 |
gccgatgctttagcaaacattggcttatctttgaactcttttgtctattactatactattcatgttgaagttaggagtgattatgataaaagtaagattg |
316 |
Q |
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| T |
34476492 |
gctgatgctttagcaaacattggcttatctttgaactcttttgtctattactatactattcatgttgaagttaggagtgattatgataaaagtaagattg |
34476591 |
T |
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| Q |
317 |
gttgacctaattttaggtttactcattttttagaaggtcttggcactcccct |
368 |
Q |
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| T |
34476592 |
gttgacctaattttaggtttactcattttttagaaggtcttggcactcccct |
34476643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 357
Target Start/End: Complemental strand, 22808460 - 22808278
Alignment:
| Q |
175 |
aattttgtggttattcatatttatagggagggtaatacttgtgccgatgctttagcaaacattggcttatctttgaactcttttgtctattactatacta |
274 |
Q |
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| T |
22808460 |
aattttgtagtttctcatgtttgtagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattatagcacta |
22808361 |
T |
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| Q |
275 |
ttcatgttgaagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggtctt |
357 |
Q |
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| T |
22808360 |
ttccattggatgttaggggttattatgttaaaaataggcttggttgacctaattttaggtttactcactcttgagaaggtctt |
22808278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 34028698 - 34028628
Alignment:
| Q |
284 |
aagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggt |
354 |
Q |
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| T |
34028698 |
aagttaggagtgattatgttaaaaataggtttggttggcctaattttaggtttaatcactattgagaaggt |
34028628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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