View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_low_24 (Length: 351)

Name: NF13177_low_24
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_low_24
NF13177_low_24
[»] scaffold0043 (1 HSPs)
scaffold0043 (100-155)||(86935-86990)
[»] chr2 (5 HSPs)
chr2 (154-229)||(45305866-45305941)
chr2 (100-148)||(43900495-43900543)
chr2 (100-149)||(28527284-28527333)
chr2 (119-154)||(41212424-41212459)
chr2 (100-154)||(1400730-1400784)
[»] chr4 (10 HSPs)
chr4 (100-154)||(24669272-24669326)
chr4 (107-154)||(17633442-17633489)
chr4 (100-154)||(35544513-35544567)
chr4 (100-148)||(9809041-9809089)
chr4 (119-154)||(1966790-1966825)
chr4 (154-229)||(9810659-9810734)
chr4 (119-154)||(9810881-9810916)
chr4 (119-154)||(17633298-17633333)
chr4 (154-229)||(17633476-17633551)
chr4 (120-148)||(55666938-55666966)
[»] chr3 (20 HSPs)
chr3 (100-155)||(27365118-27365174)
chr3 (154-234)||(27040722-27040802)
chr3 (108-155)||(27326173-27326220)
chr3 (108-155)||(27332410-27332457)
chr3 (100-154)||(3823612-3823666)
chr3 (110-154)||(5341985-5342029)
chr3 (102-154)||(19280298-19280350)
chr3 (107-155)||(27707634-27707682)
chr3 (100-147)||(31545715-31545762)
chr3 (100-149)||(27335512-27335562)
chr3 (120-149)||(11501274-11501303)
chr3 (154-223)||(11501410-11501479)
chr3 (119-152)||(22432448-22432481)
chr3 (113-154)||(27079402-27079443)
chr3 (113-154)||(27085199-27085240)
chr3 (100-149)||(27364961-27365010)
chr3 (100-155)||(18733438-18733494)
chr3 (118-154)||(19280159-19280195)
chr3 (100-144)||(27335360-27335404)
chr3 (121-149)||(34164325-34164353)
[»] scaffold0251 (1 HSPs)
scaffold0251 (154-229)||(10750-10825)
[»] chr6 (12 HSPs)
chr6 (154-229)||(13767102-13767177)
chr6 (100-148)||(23595121-23595169)
chr6 (100-154)||(2430651-2430705)
chr6 (120-154)||(3222551-3222585)
chr6 (100-154)||(9068504-9068558)
chr6 (100-149)||(15341859-15341908)
chr6 (108-148)||(10304802-10304842)
chr6 (100-148)||(33815110-33815158)
chr6 (120-155)||(11108125-11108160)
chr6 (100-149)||(3222397-3222446)
chr6 (107-155)||(11108177-11108225)
chr6 (119-155)||(23595259-23595295)
[»] chr1 (12 HSPs)
chr1 (101-149)||(38244801-38244849)
chr1 (109-155)||(2995962-2996007)
chr1 (107-149)||(5855072-5855114)
chr1 (100-148)||(9929871-9929919)
chr1 (97-149)||(17227499-17227551)
chr1 (102-148)||(34490289-34490335)
chr1 (108-154)||(42604325-42604371)
chr1 (102-155)||(5831633-5831686)
chr1 (119-148)||(24708074-24708103)
chr1 (154-202)||(5831672-5831720)
chr1 (102-154)||(25238577-25238629)
chr1 (100-148)||(34490156-34490203)
[»] chr7 (15 HSPs)
chr7 (119-154)||(22740117-22740152)
chr7 (100-154)||(15958269-15958323)
chr7 (100-154)||(20556727-20556781)
chr7 (119-154)||(5083749-5083784)
chr7 (100-151)||(5083885-5083936)
chr7 (154-229)||(18312726-18312801)
chr7 (100-155)||(18312787-18312842)
chr7 (95-154)||(22033154-22033213)
chr7 (100-155)||(27523441-27523496)
chr7 (119-149)||(21589741-21589771)
chr7 (108-154)||(28805125-28805171)
chr7 (154-223)||(28804887-28804956)
chr7 (120-148)||(15958428-15958456)
chr7 (100-148)||(20556868-20556916)
chr7 (108-152)||(21589586-21589630)
[»] scaffold0126 (1 HSPs)
scaffold0126 (101-147)||(21575-21621)
[»] chr8 (11 HSPs)
chr8 (100-154)||(31596756-31596810)
chr8 (100-149)||(40502388-40502437)
chr8 (154-202)||(5322097-5322145)
chr8 (100-148)||(15714789-15714837)
chr8 (154-229)||(31596694-31596769)
chr8 (100-154)||(6809895-6809949)
chr8 (119-149)||(40502195-40502225)
chr8 (118-155)||(5322074-5322111)
chr8 (118-155)||(33286177-33286214)
chr8 (107-155)||(31273663-31273711)
chr8 (154-234)||(31273697-31273777)
[»] scaffold0213 (1 HSPs)
scaffold0213 (100-149)||(24932-24981)
[»] chr5 (9 HSPs)
chr5 (100-148)||(15221663-15221711)
chr5 (154-230)||(35922606-35922682)
chr5 (154-234)||(43461835-43461915)
chr5 (119-154)||(35922669-35922704)
chr5 (100-151)||(36169427-36169478)
chr5 (100-146)||(7156180-7156226)
chr5 (100-154)||(43262794-43262848)
chr5 (100-154)||(43461795-43461848)
chr5 (118-155)||(38522079-38522116)
[»] scaffold1126 (1 HSPs)
scaffold1126 (100-154)||(303-357)


Alignment Details
Target: scaffold0043 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 86990 - 86935
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  86990 aatagtggtcacacaaccgaaaaaatgtggtcacacaaactatatatttgattaat 86935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 45305941 - 45305866
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    |||||||||||||| || |||||| ||||||| |||||||||||||||||| |||| |||| || |||||||||||    
T  45305941 atatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgtaaatctatctttatt 45305866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 43900543 - 43900495
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  43900543 aatagtggtcacacaactgaaaaaatgtgatcacacagaccatatattt 43900495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 28527333 - 28527284
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||| ||||| ||||  |||||||||||||||||||||||||||||||    
T  28527333 aatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttg 28527284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 41212424 - 41212459
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||||||||||||||||||||||||||| ||||    
T  41212424 aaaaaatgtggtcacacagaccatatatttggttaa 41212459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 1400784 - 1400730
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| ||||  |||||||||||||||||| |||||||||||| ||||    
T  1400784 aatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaa 1400730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 24669272 - 24669326
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24669272 aatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaa 24669326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 17633442 - 17633489
Alignment:
Q  107 gtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  17633442 gtcacgcaactgaaaaaatgtggtcacacagaccatatatttggttaa 17633489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 35544513 - 35544567
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| |||| ||||| ||||||||||| ||||||| |||||||||||||||||    
T  35544513 aatagtggtcatacaacggaaaaaatgtgatcacacataccatatatttgattaa 35544567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 9809089 - 9809041
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  9809089 aatagtggtcacgcaactgaaaaaatgtggtcacgcagaccatatattt 9809041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 1966825 - 1966790
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1966825 aaaaaatgtggtcacacagaccatatatttggttaa 1966790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 9810734 - 9810659
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    |||||||| ||||| || ||||||  | |||| |||||| | ||||||||| |||| |||||||||||||||||||    
T  9810734 atatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttatt 9810659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 9810881 - 9810916
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9810881 aaaaaatgtggtcacacagaccatatatttggttaa 9810916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 17633333 - 17633298
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||||||||||||||||||||||||||| ||||    
T  17633333 aaaaaatgtggtcacacagaccatatatttggttaa 17633298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 17633476 - 17633551
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    ||||||||| |||| || ||||||  | |||| |||||||| ||||||||| |||| || ||||||||||||||||    
T  17633476 atatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatctttatt 17633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 55666938 - 55666966
Alignment:
Q  120 aaaaatgtggtcacacagaccatatattt 148  Q
    |||||||||||||||||||||||||||||    
T  55666938 aaaaatgtggtcacacagaccatatattt 55666966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 27365118 - 27365174
Alignment:
Q  100 aatagttgtcacacaaccgaaaa-aatgtggtcacacagaccatatatttgattaat 155  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  27365118 aatagtggtcacacaaccgaaaaaaatgtggtcacacaaaccatatatttgattaat 27365174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 27040722 - 27040802
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttattatatt 234  Q
    ||||||||| ||||  | |||||||||||||  ||||||||| |||||| | | |||||||||||||||||||||| ||||    
T  27040722 atatatttggttaaccgaaattttctagagtagtacaaaggaatgtacacattgagagtgtcaacctatctttattctatt 27040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 27326173 - 27326220
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  27326173 tcacgcaaccgaaaaaatgtggtcagacaaaccatatatttgattaat 27326220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 27332410 - 27332457
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  27332410 tcacgcaaccgaaaaaatgtggtcagacaaaccatatatttgattaat 27332457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 3823666 - 3823612
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  3823666 aatagtggtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaa 3823612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 5341985 - 5342029
Alignment:
Q  110 acacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||    
T  5341985 acacaactaaaaaaatgtggtcacacagaccatatattcgattaa 5342029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 19280298 - 19280350
Alignment:
Q  102 tagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| ||||||| ||  ||||||||| ||||||||||||||||||||||||||    
T  19280298 tagtggtcacaccacttaaaaaatgttgtcacacagaccatatatttgattaa 19280350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 27707682 - 27707634
Alignment:
Q  107 gtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||||||    
T  27707682 gtcacacaattgaaaaaatgtgggcacacaaaccatatatttgattaat 27707634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 31545715 - 31545762
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatt 147  Q
    |||||| ||||||||||  |||||||||||||||| ||||||||||||    
T  31545715 aatagtggtcacacaactaaaaaaatgtggtcacatagaccatatatt 31545762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 27335512 - 27335562
Alignment:
Q  100 aatagttgtcacacaaccgaaaa-aatgtggtcacacagaccatatatttg 149  Q
    |||||| ||||| |||||||||| |||||||||||||| ||||||||||||    
T  27335512 aatagtagtcacgcaaccgaaaaaaatgtggtcacacaaaccatatatttg 27335562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 11501303 - 11501274
Alignment:
Q  120 aaaaatgtggtcacacagaccatatatttg 149  Q
    ||||||||||||||||||||||||||||||    
T  11501303 aaaaatgtggtcacacagaccatatatttg 11501274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 11501410 - 11501479
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatc 223  Q
    ||||||||| |||| |  ||||||||| |||| || ||||||||||||| | |||| |||||||||||||    
T  11501410 atatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatc 11501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 22432448 - 22432481
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgatt 152  Q
    ||||||||| ||||||||||||||||||||||||    
T  22432448 aaaaaatgtagtcacacagaccatatatttgatt 22432481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 27079402 - 27079443
Alignment:
Q  113 caaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  27079402 caactgaaaaattgtggtcacacagaccatatatttggttaa 27079443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 27085199 - 27085240
Alignment:
Q  113 caaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  27085199 caactgaaaaattgtggtcacacagaccatatatttggttaa 27085240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 27365010 - 27364961
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||||||||||||||  ||| ||||||||||| || ||||||||||||    
T  27365010 aatagttgtcacacaactaaaataatgtggtcacgcataccatatatttg 27364961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 18733494 - 18733438
Alignment:
Q  100 aatagttgtcacacaaccgaa-aaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||| ||||| |||||||| |||||||||| ||||| |||||||||||| |||||    
T  18733494 aatagtagtcacgcaaccgaataaaatgtggtaacacaaaccatatatttggttaat 18733438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 19280195 - 19280159
Alignment:
Q  118 gaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  19280195 gaaaaaatgtggtcactcagaccatatatttggttaa 19280159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 27335404 - 27335360
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatat 144  Q
    |||||||||||| ||||  |||||||||||||||||| |||||||    
T  27335404 aatagttgtcacgcaactaaaaaaatgtggtcacacataccatat 27335360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 34164353 - 34164325
Alignment:
Q  121 aaaatgtggtcacacagaccatatatttg 149  Q
    |||||||||||||||||||||||||||||    
T  34164353 aaaatgtggtcacacagaccatatatttg 34164325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 10750 - 10825
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    ||||||||| ||||||| |||||||||||||| ||||||||| |||||||| ||||  |||  |||||||||||||    
T  10750 atatatttggttaattgaaattttctagagtggtacaaaggaatgtacatattaaggatgtttacctatctttatt 10825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 13767177 - 13767102
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||||||| | | ||||||||||| |||| |||||    
T  13767177 atatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatttagagtgtcaacttatcattatt 13767102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 23595169 - 23595121
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  23595169 aatagttgtcacacaactaaaaaaatatggtcacacagaccatatattt 23595121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 2430651 - 2430705
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| |||| ||||||||||||||||||| |||||||||||| ||||    
T  2430651 aatagtggtcacgcaactgaaaaaatgtggtcacacaaaccatatatttggttaa 2430705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 3222551 - 3222585
Alignment:
Q  120 aaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||||||||||||||||||||||||||||||    
T  3222551 aaaaatgtggtcacacagaccatatatttgattaa 3222585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 9068504 - 9068558
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| ||||  |||||||||||||||||| |||||||||||||||||    
T  9068504 aatagtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaa 9068558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 15341859 - 15341908
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  15341859 aatagtggtcacacaccttaaaaaatgtggtcacacagaccatatatttg 15341908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 10304802 - 10304842
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  10304802 tcacgcaactgaaaaaatgtggtcacacagaccatatattt 10304842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 33815110 - 33815158
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| ||||| |||| |||||||||||||||||||||| ||||||||    
T  33815110 aatagtggtcacgcaactgaaaaaatgtggtcacacagactatatattt 33815158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 11108160 - 11108125
Alignment:
Q  120 aaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||||||||||||||||||||||||||| |||||    
T  11108160 aaaaatgtggtcacacagaccatatatttggttaat 11108125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 3222446 - 3222397
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||| ||||| |||| ||||||||||||||||| | ||||||||||||    
T  3222446 aatagtggtcacgcaactgaaaaaatgtggtcacagacaccatatatttg 3222397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 11108177 - 11108225
Alignment:
Q  107 gtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    ||||| |||| ||||||||||||||||||| | |||||||||| |||||    
T  11108177 gtcacgcaactgaaaaaatgtggtcacacaaatcatatatttggttaat 11108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 23595259 - 23595295
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  23595259 aaaaaatgtggtcacacagactatatatttggttaat 23595295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 38244801 - 38244849
Alignment:
Q  101 atagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  38244801 atagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttg 38244849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 2996007 - 2995962
Alignment:
Q  109 cacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  2996007 cacacaactgaaaaaatgtggtcacaca-accatatatttgattaat 2995962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 5855114 - 5855072
Alignment:
Q  107 gtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  5855114 gtcacacaactgaaaatatgtggtcacacagaccatatatttg 5855072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 9929871 - 9929919
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| ||||| |||  |||||||||||||||||||||||||||||||    
T  9929871 aatagtggtcacgcaaatgaaaaaatgtggtcacacagaccatatattt 9929919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 17227551 - 17227499
Alignment:
Q  97 aagaatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    ||||||||| ||||| || |  |||||||||||||||||||||||||||||||    
T  17227551 aagaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatatttg 17227499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 34490289 - 34490335
Alignment:
Q  102 tagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||| ||||| ||||  ||||||||||||||||||||||||||||||    
T  34490289 tagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattt 34490335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 42604325 - 42604371
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||||  ||| |||||||||||||| |||||||||||||||||    
T  42604325 tcacacaactaaaacaatgtggtcacacaaaccatatatttgattaa 42604371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 5831633 - 5831686
Alignment:
Q  102 tagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||| ||||| ||||  ||||||| ||||||||||||||||||||||| |||||    
T  5831633 tagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaat 5831686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 148
Target Start/End: Complemental strand, 24708103 - 24708074
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatattt 148  Q
    ||||||||||||||||||||||||||||||    
T  24708103 aaaaaatgtggtcacacagaccatatattt 24708074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 5831672 - 5831720
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtaca 202  Q
    ||||||||| ||||||| ||||||  ||||||||||||||| |||||||    
T  5831672 atatatttggttaattgaaatttttcagagtgatacaaaggggtgtaca 5831720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 25238577 - 25238629
Alignment:
Q  102 tagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| |||||| |||  |||||||||||||||| | |||||||||||||||||    
T  25238577 tagtagtcacataactaaaaaaatgtggtcacagaaaccatatatttgattaa 25238629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 34490203 - 34490156
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| |||| ||||| ||||||||||| |||||||||||||||||||    
T  34490203 aatagtggtcatacaactgaaaaaatgtg-tcacacagaccatatattt 34490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 22740152 - 22740117
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  22740152 aaaaaatgtggtcacacagaccatatatttgattaa 22740117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15958323 - 15958269
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  15958323 aatagtggtcacacaactaaaaaaatgtggtcacactgaccatatatttggttaa 15958269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 20556781 - 20556727
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||||    
T  20556781 aatagtggtcacacaactgaaaaaatatggtcacaccgaccatatatttggttaa 20556727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 5083784 - 5083749
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||||||||||| |||||||||||||||||||    
T  5083784 aaaaaatgtggtcacaaagaccatatatttgattaa 5083749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 5083885 - 5083936
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgat 151  Q
    |||||| ||||| |||  ||||||||||||||||||| ||||||||||||||    
T  5083885 aatagtggtcacgcaattgaaaaaatgtggtcacacataccatatatttgat 5083936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 18312801 - 18312726
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    ||||||||||||||||| ||||||| |||||| |||||||| || ||||   |||| ||||| ||| |||||||||    
T  18312801 atatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctaccaatctttatt 18312726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 18312842 - 18312787
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||| || || |||| ||||| ||||||||||| ||||||||||||||||||||    
T  18312842 aatagtagtgacgcaactgaaaatatgtggtcacagagaccatatatttgattaat 18312787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 22033154 - 22033213
Alignment:
Q  95 tgaagaatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| |||||| ||||| ||||  ||||||| ||||||||||||||||||||||| ||||    
T  22033154 tgaaaaatagtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaa 22033213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 27523496 - 27523441
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||| || |||||||  |||||||||| ||||||||| ||||||||||||||||    
T  27523496 aatagtagttacacaactaaaaaaatgtgatcacacagatcatatatttgattaat 27523441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 21589741 - 21589771
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||||||||||||||||||||||||||||    
T  21589741 aaaaaatgtggtcacacagaccatatatttg 21589771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 28805125 - 28805171
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||| |||| ||||||||||||||||||| |||||||||||| ||||    
T  28805125 tcacgcaactgaaaaaatgtggtcacacataccatatatttggttaa 28805171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 28804956 - 28804887
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatc 223  Q
    ||||||||| |||| || ||||||||||| || |||||| | ||||||||| |||| ||||| |||||||    
T  28804956 atatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatc 28804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 15958428 - 15958456
Alignment:
Q  120 aaaaatgtggtcacacagaccatatattt 148  Q
    |||||||||||||||||||||||||||||    
T  15958428 aaaaatgtggtcacacagaccatatattt 15958456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 20556868 - 20556916
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| ||||| ||||| |||||||||||||| |||||| ||||||||    
T  20556868 aatagtggtcactcaaccaaaaaaatgtggtcaaacagactatatattt 20556916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 21589630 - 21589586
Alignment:
Q  108 tcacacaaccgaaaaaatgtggtcacacagaccatatatttgatt 152  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||    
T  21589630 tcacacaactgaaaaaatatggtcacatagacaatatatttgatt 21589586  T

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Target: scaffold0126 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 21575 - 21621
Alignment:
Q  101 atagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatt 147  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  21575 atagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatt 21621  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 31596810 - 31596756
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| || || |||| ||||||||||||||||||| |||||||||||||||||    
T  31596810 aatagtggtaacgcaactgaaaaaatgtggtcacacataccatatatttgattaa 31596756  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 40502388 - 40502437
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  40502388 aatagtggtcacacaccttaaaaaatgtggtcacacagaccatatatttg 40502437  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 5322097 - 5322145
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtaca 202  Q
    ||||||||| ||||||| ||||||  |||||||||||||||||||||||    
T  5322097 atatatttggttaattgaaatttttgagagtgatacaaaggagtgtaca 5322145  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 15714789 - 15714837
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| |||||||| | ||||||||||||| |||||||||||||||||    
T  15714789 aatagtagtcacacagctgaaaaaatgtggttacacagaccatatattt 15714837  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 31596769 - 31596694
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatt 229  Q
    |||||||||||||| || ||||||  | |||| |||||||  ||||||||| |||||||||| ||| |||||||||    
T  31596769 atatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctaccaatctttatt 31596694  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 6809895 - 6809949
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    ||||||| |||||||||   ||||||||||||||||| || ||||||||||||||    
T  6809895 aatagttatcacacaactataaaaatgtggtcacacatactatatatttgattaa 6809949  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 40502195 - 40502225
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||||||||||||||||||||||||||||    
T  40502195 aaaaaatgtggtcacacagaccatatatttg 40502225  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 5322074 - 5322111
Alignment:
Q  118 gaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  5322074 gaaaaaatgtgatcacacagaccatatatttggttaat 5322111  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 33286214 - 33286177
Alignment:
Q  118 gaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  33286214 gaaaaaatgtggtcacgcagaccatatatttggttaat 33286177  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 31273663 - 31273711
Alignment:
Q  107 gtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    ||||| |||| ||||| |||||| |||| ||||||||||||||||||||    
T  31273663 gtcacgcaactgaaaacatgtggccacatagaccatatatttgattaat 31273711  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 31273697 - 31273777
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttattatatt 234  Q
    ||||||||||||||||| ||||||| |||||| ||||||   || |||| | ||||||| || ||| ||||||||| ||||    
T  31273697 atatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctaccaatctttattctatt 31273777  T

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Target: scaffold0213 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 24932 - 24981
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttg 149  Q
    |||||| |||||||||| ||||| |||||||||||||||| |||||||||    
T  24932 aatagtggtcacacaactgaaaacatgtggtcacacagactatatatttg 24981  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 15221663 - 15221711
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatattt 148  Q
    |||||| |||||||||   ||||||||||||||||||||||||||||||    
T  15221663 aatagtggtcacacaattaaaaaaatgtggtcacacagaccatatattt 15221711  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 35922682 - 35922606
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttatta 230  Q
    |||||||||||||| || ||||||  |||||||||||||||  |||||| | |||| ||||| ||| ||||||||||    
T  35922682 atatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttatta 35922606  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 43461835 - 43461915
Alignment:
Q  154 atatatttgattaattggaattttctagagtgatacaaaggagtgtacatactaagagtgtcaacctatctttattatatt 234  Q
    |||||||||||||| || ||||||| | |||| |||||||| ||  ||| | |||||||||| ||||||||||||| ||||    
T  43461835 atatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatctttattctatt 43461915  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 35922704 - 35922669
Alignment:
Q  119 aaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||||||||||||||| |||||||||||||||||    
T  35922704 aaaaaatgtggtcacacataccatatatttgattaa 35922669  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 36169427 - 36169478
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgat 151  Q
    |||||| ||||| |||| |||| |||||||||||||| ||||||||||||||    
T  36169427 aatagtggtcacgcaactgaaagaatgtggtcacacataccatatatttgat 36169478  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 7156180 - 7156226
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatat 146  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  7156180 aatagtggtcacacaactaaaaaaatgtggtcacacggaccatatat 7156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 43262794 - 43262848
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| |||||| |||  || |||||||||||||||||||||||||||| ||||    
T  43262794 aatagtagtcacataactaaacaaatgtggtcacacagaccatatatttggttaa 43262848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 43461795 - 43461848
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| |||||||||| |||||||| ||||| || |||||||||||||||||||    
T  43461795 aatagtggtcacacaactgaaaaaatatggtc-caaagaccatatatttgattaa 43461848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 38522079 - 38522116
Alignment:
Q  118 gaaaaaatgtggtcacacagaccatatatttgattaat 155  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  38522079 gaaaaaatgtggtcacatagaccatatatttggttaat 38522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 303 - 357
Alignment:
Q  100 aatagttgtcacacaaccgaaaaaatgtggtcacacagaccatatatttgattaa 154  Q
    |||||| ||||| |||| |||||| ||||| ||||||||||||||||||| ||||    
T  303 aatagtggtcacgcaactgaaaaagtgtggccacacagaccatatatttggttaa 357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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