View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_29 (Length: 320)
Name: NF13177_low_29
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37464055 - 37464294
Alignment:
| Q |
1 |
ttttcttcatgattagattggagtagggcttatggtctgccaacaattggggggaatcaacggagtttgcttttatactagcagtatttttgatctagca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37464055 |
ttttcttcatgagtagattggagtagggcttatggtctgccaacaattggggggaatcaacggagtttgcttttatactagcagtatttttgatctagca |
37464154 |
T |
|
| Q |
101 |
ggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaaattaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37464155 |
ggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaaattaaa |
37464254 |
T |
|
| Q |
201 |
gcaagttttaaaacttgaataaccttcatgaagcactcaa |
240 |
Q |
| |
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| T |
37464255 |
gtaagttttaaaacttgaataaccttcatgaagcactcaa |
37464294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 49021170 - 49021408
Alignment:
| Q |
1 |
ttttcttcatgattagattggagtagggcttatggtctgccaacaattggggggaatcaacggagtttgcttttatactagcagtatttttgatctagca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
49021170 |
ttttcttcatgagtagattggagtagggcttatggtctgccagcaattagggggaatcaacggtgtttgcttttatactggcagtatttttgatctagca |
49021269 |
T |
|
| Q |
101 |
ggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaaattaaa |
200 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49021270 |
tgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaaattaaa |
49021369 |
T |
|
| Q |
201 |
gcaagttttaaaacttgaataaccttcatgaagcactca |
239 |
Q |
| |
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||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
49021370 |
gcatgttttgaaacttggataaccttcatgaagcactca |
49021408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 37589997 - 37589764
Alignment:
| Q |
6 |
ttcatgattagattggagtagggcttatggtctgccaacaattggggggaatcaacggagtttgcttttatactagcagtatttttgatctagcaggtac |
105 |
Q |
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||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37589997 |
ttcatgacaagattggggtagggcttatggtctgccagcaattagggggaatcaatggtgtttgcttttatactggcagtatttttgatctagcaggtac |
37589898 |
T |
|
| Q |
106 |
ttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaaattaaagcaag |
205 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
37589897 |
ttaattctgtaattgtaactcttcattccaagtttgacaccatcatactttcttgcatatcactttttgcatgtaacctatagctccaaattaaagcatc |
37589798 |
T |
|
| Q |
206 |
ttttaaaacttgaataaccttcatgaagcactca |
239 |
Q |
| |
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| ||||||| |||||||||||||||||||||||| |
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| T |
37589797 |
tattaaaacatgaataaccttcatgaagcactca |
37589764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 37583610 - 37583512
Alignment:
| Q |
6 |
ttcatgattagattggagtagggcttatggtctgccaacaattggggggaatcaacggagtttgcttttatactagcagtatttttgatctagcaggta |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||| |||||||| ||| || |||||||| |||||||||||||||| |||||||||| |
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| T |
37583610 |
ttcatgatcagattggagtagggcttatggcttgccagcaattgggtggaatcaatggaattagcttttattctagcagtatttttgacctagcaggta |
37583512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 311
Target Start/End: Complemental strand, 37589724 - 37589693
Alignment:
| Q |
280 |
gtaggatttccttctgcaacggggagtataat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
37589724 |
gtaggatttccttctgcaacggggagtataat |
37589693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 37464332 - 37464365
Alignment:
| Q |
278 |
tcgtaggatttccttctgcaacggggagtataat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
37464332 |
tcgtaggatttccttctgcgacggggagtataat |
37464365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 49021446 - 49021479
Alignment:
| Q |
278 |
tcgtaggatttccttctgcaacggggagtataat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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| T |
49021446 |
tcgtaggatttccttctgcgacggggagtataat |
49021479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 37427043 - 37426833
Alignment:
| Q |
30 |
ttatggtctgccaacaatt-ggggggaatcaacggagtttgcttttatactagcagtatttttgatctagcaggtacttaattctgtaattggaactctt |
128 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
37427043 |
ttatggtctgccagcaattaggggggaaccaatggtgtttgcttttatactagcagtatttttgatctagcatgtacttaattctgtaattgtatctctt |
37426944 |
T |
|
| Q |
129 |
cattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaaattaaagcaagttttaaaacttgaataaccttca |
228 |
Q |
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|
||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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| T |
37426943 |
cattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaaattaaagcatgttttgaaacttggataaccttca |
37426844 |
T |
|
| Q |
229 |
tgaagcactca |
239 |
Q |
| |
|
||||||||||| |
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|
| T |
37426843 |
tgaagcactca |
37426833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 37426795 - 37426762
Alignment:
| Q |
278 |
tcgtaggatttccttctgcaacggggagtataat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
37426795 |
tcgtaggatttccttctgcgacggggagtataat |
37426762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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