View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_3 (Length: 780)
Name: NF13177_low_3
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 185 - 768
Target Start/End: Original strand, 49660563 - 49661146
Alignment:
| Q |
185 |
acaacttacacgtttcaacaaatacacataaaaattaaatatcaaatcatatttgacctcaaattttcttatgtcaacctatcttttgtcttagaaattg |
284 |
Q |
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| T |
49660563 |
acaacttacacgtttcaacaaatacacataaaaattaaatatcaaatcatatttgacctcaaattttcttatgtcaacctatcttttgtcttagaaattg |
49660662 |
T |
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| Q |
285 |
cttgatgtcaccaattccaaaaggttccatggcaaagcgtcacgaaataacataatgcattgacccgtgattttgtaatatatatgggcaactctttttg |
384 |
Q |
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| T |
49660663 |
cttgatgtcaccaattccaaaaggttccatggcaaagcgtcacgaaataacataatgcattgacccgtgattttgtaatatatatgggcaactctttttg |
49660762 |
T |
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| Q |
385 |
tgacacaacgttgtttttcttaactttgtaaacnnnnnnnacacataattttacaattaaaaaatcagatttgtcttttccactttctagtctagtgtct |
484 |
Q |
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| T |
49660763 |
tgacacaacgttgtttttcttaactttgtaaactttttttacacataattttacaattaaaaaatcagatttgtcttttccactttctagtctagtgtct |
49660862 |
T |
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| Q |
485 |
taagttcttgttcttaatgatgaaaataacatgaaattgggtgaaaaattatgttacttttgttatggaataggataggatgcccattatattgaattat |
584 |
Q |
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| T |
49660863 |
taagttcttgttcttaatgatgaaaataacatgaaattgggtgaaaaattatgttacttttgttatggaataggataggatgcccattatgttgaattat |
49660962 |
T |
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| Q |
585 |
tgcctaacatatgttatgtatagatgctgcccgtaaattgaatggttcaactttaggttcccctagtttattgagttacttttgtaccctatttgtctag |
684 |
Q |
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| T |
49660963 |
tgcctaacatatgttatgtatagatgctgcccgtaaattgaatggttcaactttaggttcccctagtttattgagttacttttgtaccctatttgtctag |
49661062 |
T |
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| Q |
685 |
ttaagagtttttaactcaaaaataatataaacaacaccaaccaaatacgaatatgtagatttatatgaaccattttgttgccta |
768 |
Q |
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| T |
49661063 |
ttaagagtttttaactcaaaaataatataaacaacaccaaccaaatacgaatatgtagatttatatgaaccattttgttgccta |
49661146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 49660396 - 49660495
Alignment:
| Q |
19 |
atttggatacacatactttgaatgtgcatgtgtttgatccaaaatcatgatcaaatatatctattttttatttagattaaaaataatcaacttttgtgtc |
118 |
Q |
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| T |
49660396 |
atttggatacacatactttgaatgtgcatgtgtttgatccaaaatcatgatcaaatatatctattttttatttagattaaaaataatcaacttttgtgtc |
49660495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 518 - 596
Target Start/End: Complemental strand, 50943107 - 50943029
Alignment:
| Q |
518 |
aaattgggtgaaaaattatgttacttttgttatggaataggataggatgcccattatattgaattattgcctaacatat |
596 |
Q |
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| T |
50943107 |
aaattgggtgaaaaattatgttacttttgttatggaataggataggatgcccattatgttgaattattgcctaacatat |
50943029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 50943289 - 50943221
Alignment:
| Q |
337 |
taatgcattgacccgtgattttgtaatatatatgggcaactctttttgtgacacaacgttgtttttcttaacttt |
411 |
Q |
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| T |
50943289 |
taatgcattgacccgtggttttctaatat----gggcaactcttt--gtgacacaacgttgtttttcttaacttt |
50943221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 50943348 - 50943299
Alignment:
| Q |
248 |
ttttcttatgtcaacctatcttttgtcttagaaattgcttgatgtcacca |
297 |
Q |
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| T |
50943348 |
tttttttatgtcaacctatcttttgtcttaaaaatggcttgatgtcacca |
50943299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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