View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_low_32 (Length: 281)

Name: NF13177_low_32
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_low_32
NF13177_low_32
[»] chr4 (1 HSPs)
chr4 (1-281)||(36610365-36610645)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 36610645 - 36610365
Alignment:
Q  1 aacactaccaacttgttccacttgttcttcaacataatttttattctttgacaaatcttctttaattcttgcacctgtataaacacaacattttgcaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36610645 aacactaccaacttgttccacttgttcttcaacataatttttattctttgacaaatcttctttaattcttgcacctgtataaacacaacattttgcaaca 36610546  T
Q  101 acatccttaaccttgtctttccctgtttgaaaccaatttacatgctctttttccaatactcacctcagaaagtgctttgtcttttctctatcattattga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36610545 acatccttaaccttgtctttccctatttgaaaccaatttacatgctctttttccaatactcacctcagaaagtgctttgtcttttctctatcattattga 36610446  T
Q  201 tcttgaaagccattctttgtttccattccatcattattgtcagtgttagttctatacactttggatttcactgcacttcct 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36610445 tcttgaaagccattctttgtttccattccatcattattgtcagtgttagttctatacactttggatttcactgcacttcct 36610365  T

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