View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_35 (Length: 240)
Name: NF13177_low_35
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34812520 - 34812298
Alignment:
| Q |
1 |
cagtaagtggagctcctcaatttgagtctctagatgtcttagcttctggaatgaccagaaaatcagcagctctacttttctatcaaacctgtggtattac |
100 |
Q |
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| T |
34812520 |
cagtaagtggagctcctcaatttgagtctctagatgtcttagcttctggaatgaccagaaaatcagcagctctacttttctatcaaacctgtggtattac |
34812421 |
T |
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| Q |
101 |
tgctcgtagtcctctaacttaccagttatattaatattttactactgatttatcaaaagatcattcccaagtttca--atatatgtgttttaactttgat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34812420 |
tgctcgtagtcctctaacttaccagttatattaatattttactactgatttatcaaaagatcattcccaagtttcattatatatgtgttttaactttgat |
34812321 |
T |
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| Q |
199 |
gtgcacagttcttgcgacccgcg |
221 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
34812320 |
gtgcacagttcttgcgacccgcg |
34812298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 35862958 - 35862747
Alignment:
| Q |
5 |
aagtggagctcctcaatttgagtctctagatgtcttagcttctggaatgaccagaaaatcagcagctctacttttctatcaaacctgtggtattactgct |
104 |
Q |
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|||||||||||||||||||| ||| || ||| || ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
35862958 |
aagtggagctcctcaatttgtgtccctggatatcctagctgctggaatgaccaaaaaatcagcagctatacttttctatcaaacctgtggtatttttact |
35862859 |
T |
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| Q |
105 |
cgtagtcctctaacttaccagttatattaatattttactactgatttatcaaaagatcattcccaagtttcaatatatgtgttttaactttgatgtgcac |
204 |
Q |
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| | |||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||||| |||| ||||||||||||| | || | |
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| T |
35862858 |
cacatccctctaacttacaag-----ttaatattttactaatgattaatataaagatcattcccaagtttcaacatatctgttttaactttgttctgtat |
35862764 |
T |
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| Q |
205 |
agttcttgcgacccgcg |
221 |
Q |
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||||||||| ||||||| |
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| T |
35862763 |
agttcttgctacccgcg |
35862747 |
T |
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