View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_36 (Length: 232)
Name: NF13177_low_36
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14021430 - 14021649
Alignment:
| Q |
1 |
tccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaattctccaacccaatttctcagc |
100 |
Q |
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| T |
14021430 |
tccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaattctccaacccaatttctcagc |
14021529 |
T |
|
| Q |
101 |
taactccaacatcttatccttctgttcctgcgtgaattttgtcctatgcctcttcttacttgaaccacttcctccaccacttggattcgaaacatcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14021530 |
taactccaacatcttatccttctgttcctgcgtgaattttgtcctatgcctcttcttacttgaaccacttcctccaccacttggattcgaaacatcttca |
14021629 |
T |
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| Q |
201 |
agctcttccctcgtactctg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
14021630 |
agctcttccctcgtactctg |
14021649 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 46300744 - 46300827
Alignment:
| Q |
59 |
accttcatcatgtttctgaattctccaacccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgt |
142 |
Q |
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| T |
46300744 |
accttcatcttccttctgaattctccacccaattttctccgcaaatgcaagcatcttatccttttgttcctgcgtgaattttgt |
46300827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 56378802 - 56378749
Alignment:
| Q |
92 |
tttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
145 |
Q |
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| T |
56378802 |
tttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcct |
56378749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2494271 - 2494415
Alignment:
| Q |
1 |
tccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaattctccaacccaatttctcagc |
100 |
Q |
| |
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||||||||||||||||| ||| | ||||||| |||||||||| || || ||||| || | ||||| | |||||| || |||| || | ||||||||| |
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| T |
2494271 |
tccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacccaactttctcagc |
2494370 |
T |
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| Q |
101 |
taactccaacatcttatccttctgttcctgcgtgaattttgtcct |
145 |
Q |
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|| | || ||||||||||||||| || || || || |||||||| |
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| T |
2494371 |
aaatttcagcatcttatccttctgatcttgtgtaaactttgtcct |
2494415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 3683646 - 3683678
Alignment:
| Q |
110 |
catcttatccttctgttcctgcgtgaattttgt |
142 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
3683646 |
catcttttccttctgttcctgcgtgaattttgt |
3683678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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