View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_low_4 (Length: 589)

Name: NF13177_low_4
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_low_4
NF13177_low_4
[»] chr6 (13 HSPs)
chr6 (30-580)||(26890735-26891285)
chr6 (388-579)||(27713769-27713960)
chr6 (433-566)||(26853961-26854094)
chr6 (477-564)||(26631760-26631847)
chr6 (477-564)||(26737735-26737822)
chr6 (445-562)||(27422277-27422394)
chr6 (466-566)||(27651942-27652041)
chr6 (487-579)||(26966390-26966482)
chr6 (492-580)||(31289542-31289630)
chr6 (394-448)||(27651844-27651898)
chr6 (378-451)||(26641217-26641290)
chr6 (378-451)||(26747183-26747256)
chr6 (382-451)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (388-579)||(17984-18175)
[»] chr8 (2 HSPs)
chr8 (388-582)||(29269635-29269829)
chr8 (44-157)||(12072659-12072771)
[»] scaffold0003 (1 HSPs)
scaffold0003 (445-562)||(64969-65086)
[»] chr4 (5 HSPs)
chr4 (244-318)||(5078646-5078720)
chr4 (377-459)||(18682705-18682787)
chr4 (409-459)||(18650319-18650369)
chr4 (410-459)||(18718539-18718588)
chr4 (381-425)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (403-459)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 30 - 580
Target Start/End: Complemental strand, 26891285 - 26890735
Alignment:
Q  30 aaacaggatgagaggtttttgaattggggaagttttgattagttgtacagannnnnnnnacacataatccagcatgtcattcgggacactctcgggaagg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||    
T  26891285 aaacaggatgagaggtttttgaattggggaagttttgattagttgtacagattttttttacacataatccaacatgtcattcgggacactctcgggaagg 26891186  T
Q  130 aatctgtcgcgagaaatagtatttttcttaacataaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagc 229  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891185 aatctgtcgcgagaaatagcatttttcttaacacaaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagc 26891086  T
Q  230 acattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891085 acattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcct 26890986  T
Q  330 cgtgtgtccagggtgaaaaggcattcattcacatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtac 429  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890985 cttgtgtccagggtgaaaaggcattcattcacattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtac 26890886  T
Q  430 tcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaata 529  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890885 tcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaata 26890786  T
Q  530 acttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 580  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26890785 acttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 388 - 579
Target Start/End: Original strand, 27713769 - 27713960
Alignment:
Q  388 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 487  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  488 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 579  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 433 - 566
Target Start/End: Complemental strand, 26854094 - 26853961
Alignment:
Q  433 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 532  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  533 tattaatcacaagagccattcggtgttgttgctg 566  Q
    ||||||||||||||||||| | ||||||||||||    
T  26853994 tattaatcacaagagccatacagtgttgttgctg 26853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 564
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  477 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 564  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 564
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  477 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 564  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 562
Target Start/End: Original strand, 27422277 - 27422394
Alignment:
Q  445 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 544  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  545 gagccattcggtgttgtt 562  Q
    ||||||| | ||||||||    
T  27422377 gagccatacagtgttgtt 27422394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 466 - 566
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  466 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 565  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 487 - 579
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  487 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 579  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 580
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  492 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 580  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  394 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 448  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  378 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 451  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  378 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 451  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  382 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 451  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

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Target: scaffold0349 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 388 - 579
Target Start/End: Complemental strand, 18175 - 17984
Alignment:
Q  388 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 487  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  488 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 579  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 388 - 582
Target Start/End: Original strand, 29269635 - 29269829
Alignment:
Q  388 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 487  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  488 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgct 582  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 12072771 - 12072659
Alignment:
Q  44 gtttttgaattggggaagttttgattagttgtacagannnnnnnnacacataatccagcatgtcattcgggacactctcgggaaggaatctgtcgcgaga 143  Q
    |||||||||||||||||| ||| |||| |||| ||||        |||| ||||| | ||||||||||||| |||||||||||||||| |||||||||||    
T  12072771 gtttttgaattggggaagattttattatttgtccagatgtcttttacacgtaatcaa-catgtcattcgggtcactctcgggaaggaaactgtcgcgaga 12072673  T
Q  144 aatagtatttttct 157  Q
    ||||| ||||||||    
T  12072672 aatagcatttttct 12072659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 562
Target Start/End: Complemental strand, 65086 - 64969
Alignment:
Q  445 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 544  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  545 gagccattcggtgttgtt 562  Q
    ||||||| | ||||||||    
T  64986 gagccatacagtgttgtt 64969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 5078720 - 5078646
Alignment:
Q  244 ttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa 318  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||| | ||||||||||||||||||||||    
T  5078720 ttgtgatatttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa 5078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  377 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 459  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  409 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 459  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  410 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 459  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  381 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 425  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  403 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 459  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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