View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13177_low_6 (Length: 578)

Name: NF13177_low_6
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13177_low_6
NF13177_low_6
[»] chr4 (26 HSPs)
chr4 (9-562)||(7723341-7723894)
chr4 (152-238)||(6659332-6659419)
chr4 (152-238)||(19935487-19935574)
chr4 (444-536)||(7716453-7716545)
chr4 (442-536)||(7522087-7522181)
chr4 (151-227)||(13991391-13991469)
chr4 (156-238)||(40206153-40206236)
chr4 (442-536)||(7484030-7484124)
chr4 (150-238)||(24667655-24667744)
chr4 (498-546)||(7493005-7493053)
chr4 (444-536)||(7720283-7720375)
chr4 (151-227)||(17254895-17254973)
chr4 (151-222)||(54700614-54700687)
chr4 (155-229)||(18657052-18657128)
chr4 (152-202)||(38888028-38888079)
chr4 (158-227)||(50515907-50515978)
chr4 (151-238)||(7634079-7634167)
chr4 (149-194)||(21433610-21433655)
chr4 (498-546)||(7501019-7501067)
chr4 (444-536)||(7502621-7502713)
chr4 (150-234)||(7724082-7724165)
chr4 (152-202)||(18689559-18689610)
chr4 (151-189)||(13990729-13990767)
chr4 (155-223)||(22486792-22486861)
chr4 (152-189)||(9260573-9260610)
chr4 (150-202)||(10494901-10494954)
[»] chr2 (25 HSPs)
chr2 (152-238)||(36647293-36647380)
chr2 (149-238)||(15129387-15129477)
chr2 (152-238)||(27952319-27952407)
chr2 (150-229)||(23457644-23457725)
chr2 (152-238)||(22011436-22011524)
chr2 (152-238)||(33655628-33655715)
chr2 (155-238)||(2155970-2156055)
chr2 (151-238)||(33051617-33051706)
chr2 (152-238)||(27956155-27956243)
chr2 (152-238)||(31636337-31636425)
chr2 (151-227)||(5171597-5171675)
chr2 (150-227)||(12966475-12966553)
chr2 (150-227)||(21772373-21772451)
chr2 (86-155)||(27955588-27955657)
chr2 (155-238)||(31634107-31634192)
chr2 (157-227)||(28737911-28737982)
chr2 (150-238)||(1518191-1518280)
chr2 (152-227)||(4184929-4185006)
chr2 (151-202)||(32162007-32162059)
chr2 (156-227)||(8294582-8294655)
chr2 (156-223)||(28737841-28737910)
chr2 (152-238)||(32163773-32163860)
chr2 (157-198)||(23456580-23456622)
chr2 (157-202)||(2165899-2165944)
chr2 (151-187)||(12123950-12123986)
[»] chr8 (27 HSPs)
chr8 (152-238)||(2189723-2189810)
chr8 (154-228)||(42890394-42890469)
chr8 (152-238)||(42891665-42891753)
chr8 (155-238)||(24731035-24731120)
chr8 (152-238)||(22921851-22921939)
chr8 (156-238)||(24731231-24731315)
chr8 (150-238)||(18468647-18468736)
chr8 (152-238)||(6845336-6845424)
chr8 (152-238)||(22512047-22512135)
chr8 (152-238)||(22519347-22519435)
chr8 (152-238)||(22926649-22926737)
chr8 (152-238)||(37189866-37189954)
chr8 (84-155)||(42890977-42891048)
chr8 (152-216)||(23570584-23570649)
chr8 (151-194)||(2687741-2687784)
chr8 (84-155)||(23571081-23571151)
chr8 (152-226)||(26374900-26374975)
chr8 (84-155)||(42891109-42891180)
chr8 (152-202)||(23573583-23573633)
chr8 (149-216)||(16598246-16598315)
chr8 (152-216)||(22520823-22520888)
chr8 (182-238)||(26378031-26378088)
chr8 (150-200)||(2689144-2689195)
chr8 (150-227)||(14130163-14130242)
chr8 (150-227)||(20693797-20693876)
chr8 (152-189)||(2609547-2609584)
chr8 (202-238)||(18180714-18180750)
[»] chr1 (22 HSPs)
chr1 (150-238)||(31915548-31915637)
chr1 (152-238)||(8931220-8931308)
chr1 (151-226)||(12944115-12944192)
chr1 (152-238)||(50857445-50857533)
chr1 (155-213)||(13444015-13444074)
chr1 (150-227)||(28660758-28660837)
chr1 (150-228)||(31913375-31913454)
chr1 (84-149)||(13443411-13443476)
chr1 (152-227)||(9031017-9031094)
chr1 (159-238)||(40058103-40058184)
chr1 (152-223)||(50713713-50713786)
chr1 (159-194)||(10927199-10927234)
chr1 (156-223)||(43681465-43681535)
chr1 (151-227)||(10925739-10925814)
chr1 (152-227)||(10928289-10928366)
chr1 (152-227)||(28661080-28661157)
chr1 (150-202)||(33152757-33152810)
chr1 (157-227)||(23987581-23987653)
chr1 (150-227)||(239685-239764)
chr1 (151-224)||(8221487-8221562)
chr1 (149-195)||(8967850-8967896)
chr1 (157-202)||(26981516-26981561)
[»] chr7 (29 HSPs)
chr7 (152-238)||(13882687-13882775)
chr7 (155-238)||(5934607-5934691)
chr7 (155-238)||(13886160-13886245)
chr7 (151-235)||(30217814-30217898)
chr7 (152-238)||(859157-859245)
chr7 (152-238)||(1217161-1217249)
chr7 (150-227)||(3778721-3778799)
chr7 (150-238)||(4888687-4888776)
chr7 (149-226)||(1883486-1883565)
chr7 (151-216)||(27309638-27309705)
chr7 (151-227)||(11000838-11000916)
chr7 (149-221)||(1365669-1365742)
chr7 (150-202)||(24840141-24840194)
chr7 (150-202)||(27142664-27142717)
chr7 (150-227)||(1369803-1369882)
chr7 (151-238)||(1874537-1874626)
chr7 (152-233)||(1220446-1220529)
chr7 (149-198)||(1753640-1753690)
chr7 (159-202)||(8063842-8063885)
chr7 (151-227)||(4133286-4133364)
chr7 (150-238)||(7803032-7803122)
chr7 (149-202)||(11228978-11229032)
chr7 (149-194)||(1786680-1786725)
chr7 (152-227)||(6451762-6451839)
chr7 (150-231)||(13466729-13466812)
chr7 (151-217)||(35814870-35814937)
chr7 (151-189)||(11228720-11228758)
chr7 (151-238)||(8916379-8916467)
chr7 (155-184)||(13886245-13886274)
[»] chr6 (21 HSPs)
chr6 (152-238)||(3536034-3536122)
chr6 (152-238)||(3542245-3542333)
chr6 (156-224)||(11658936-11659005)
chr6 (157-231)||(8048974-8049049)
chr6 (150-238)||(27822119-27822209)
chr6 (150-221)||(14238434-14238507)
chr6 (152-235)||(29340810-29340895)
chr6 (156-238)||(30049920-30050004)
chr6 (152-238)||(33615505-33615593)
chr6 (156-202)||(30052207-30052253)
chr6 (159-227)||(18727115-18727184)
chr6 (152-227)||(12882123-12882200)
chr6 (159-238)||(18718201-18718279)
chr6 (160-235)||(22889268-22889345)
chr6 (160-235)||(22910810-22910887)
chr6 (156-219)||(1127258-1127323)
chr6 (205-237)||(8047390-8047422)
chr6 (84-140)||(8048395-8048451)
chr6 (160-235)||(22873822-22873897)
chr6 (149-194)||(24443118-24443163)
chr6 (158-202)||(33215201-33215246)
[»] chr3 (11 HSPs)
chr3 (152-238)||(5128909-5128997)
chr3 (152-238)||(43303961-43304049)
chr3 (152-238)||(43306673-43306761)
chr3 (150-238)||(2472690-2472779)
chr3 (84-155)||(43306216-43306287)
chr3 (152-238)||(3063738-3063826)
chr3 (152-238)||(3068876-3068964)
chr3 (151-238)||(365594-365682)
chr3 (149-227)||(33175832-33175912)
chr3 (149-227)||(52708841-52708921)
chr3 (159-202)||(45168358-45168401)
[»] chr5 (8 HSPs)
chr5 (152-239)||(21848965-21849054)
chr5 (150-194)||(19497351-19497395)
chr5 (152-238)||(40778787-40778875)
chr5 (152-221)||(492567-492638)
chr5 (149-227)||(22440855-22440934)
chr5 (151-191)||(18252415-18252455)
chr5 (151-227)||(26140342-26140420)
chr5 (150-198)||(9868447-9868496)
[»] scaffold0054 (3 HSPs)
scaffold0054 (155-226)||(37714-37786)
scaffold0054 (149-202)||(49319-49372)
scaffold0054 (160-235)||(10663-10740)
[»] scaffold0531 (1 HSPs)
scaffold0531 (157-231)||(11597-11672)
[»] scaffold0251 (1 HSPs)
scaffold0251 (150-238)||(9700-9791)
[»] scaffold0110 (2 HSPs)
scaffold0110 (168-238)||(46734-46806)
scaffold0110 (152-193)||(45310-45351)
[»] scaffold0240 (3 HSPs)
scaffold0240 (155-228)||(14850-14924)
scaffold0240 (151-218)||(1657-1725)
scaffold0240 (156-223)||(16051-16119)
[»] scaffold0024 (1 HSPs)
scaffold0024 (151-227)||(145733-145811)
[»] scaffold0236 (1 HSPs)
scaffold0236 (150-226)||(16396-16473)
[»] scaffold0330 (1 HSPs)
scaffold0330 (151-218)||(17639-17707)


Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Complemental strand, 7723894 - 7723341
Alignment:
Q  9 gacatcatcatcaatagaaacaatcaaaacatgagatgtggatcaattagagttccacgtggtggagtgtgacaaaattcttacgccgttgcaagaggag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7723894 gacatcatcatcaatagaaacaatcaaaacatgagatgtggatcaattagagttccacgtggtggagtgtgacaaaattcttatgccgttgcaagaggag 7723795  T
Q  109 atcgacgttgctcagacgactgaagcgtttccaacgtctgtggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctagtttagt 208  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  7723794 atcgacgttgctcagacgaccgaagcgtttccgacgtctgtggaaccctattttcacaagtttgtagcttgcaaacttgttcttttcaatctagtttagc 7723695  T
Q  209 gcttgctagcctacgcttctgtactgcgtcgttaaggatcgtaacaaccttcccccgagggagaaggtgattaaatagtttgtggtaagaggtttggaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723694 gcttgctagcctacgcttctgtactgcgtcgttaaggatcgtaacaaccttcccccgagggagaaggtgattaaatagtttgtggtaagaggtttggaat 7723595  T
Q  309 gattggttgcttgacattgaattggaacgaaattaaaattatggatatttacctttcctagagtggatagcatcaaccttttttgaatcactcaaagaca 408  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7723594 gcttggttgcttgacattgaattggaacgaaattaaaattatggatatttaccttgcctagagtggatagcatcaaccttttctgaatcactcaaagaca 7723495  T
Q  409 tagatctgattgagttacataatcttaaaggatagtgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723494 tagatctgattgagttacataatcttaaaggatagtgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggat 7723395  T
Q  509 tcaagattgttataatctaatttcaattgatggttatttgctaagcattattct 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723394 tcaagattgttataatctaatttcaattgatggttatttgctaagcattattct 7723341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 6659419 - 6659332
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||    
T  6659419 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagcgcttgctaacctacacttccgtactgcgtc 6659332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 19935487 - 19935574
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatct-agtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||| |||||||||||||||||| || || ||||| |||| ||||||| ||| ||||||||||||||||||||||||||    
T  19935487 aaccctattttcataagtttgtcgcttgcaaatttatttttttctatctgagtttagcgctggctagcctacgcttctgtactgcgtc 19935574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 444 - 536
Target Start/End: Complemental strand, 7716545 - 7716453
Alignment:
Q  444 tgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt 536  Q
    |||||| |||||||||| |||| ||| |||||| |||||||| | || |||||||||||| | ||||||||||||||||||||| ||||||||    
T  7716545 tgtagcgaagaagaaatctcaaggggctgttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaatt 7716453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 7522087 - 7522181
Alignment:
Q  442 agtgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt 536  Q
    |||||||| |||||||||| |||| |||||||||| |||||||| | |||||||||| ||||| |||| | ||||||||||| ||| ||||||||    
T  7522087 agtgtagcgaagaagaaatctcaaggggttgttgtcatcagtttcagagtcttgaaaccttaatgattaatgattgttataagctagtttcaatt 7522181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 13991469 - 13991391
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    ||||| ||||||| || |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  13991469 gaaccttattttcgcatgtttgtcgcttgcaaacttgtttcttttcaatctagatttagcgcttgctagcctacgcttc 13991391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 40206153 - 40206236
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||| |||||||   ||||||| ||| ||||| ||||||||||||||||||| ||| ||||||    
T  40206153 ctattttcacaagtttgtcgcttgcgaacttgtctctttcaatttagatttagcgcttgctagcctacgcttccgtagtgcgtc 40206236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 7484030 - 7484124
Alignment:
Q  442 agtgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt 536  Q
    |||||||| |||||||||| |||| |||||||||| |||||||| | |||||||||| ||||  |||| | ||||||||||| ||| ||||||||    
T  7484030 agtgtagcgaagaagaaatctcaaggggttgttgtcatcagtttcagagtcttgaaaccttattgattaatgattgttataagctagtttcaatt 7484124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 24667655 - 24667744
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||| || ||| | ||| |||||||| ||||| |||||  |||||||||||||||||||  |||||||||    
T  24667655 ggaaccctattttcacaagtttgttgcctgcgagcttcttcttttctatctaggtttaacgcttgctagcctacgcttccatactgcgtc 24667744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 546
Target Start/End: Original strand, 7493005 - 7493053
Alignment:
Q  498 aacttaaggattcaagattgttataatctaatttcaattgatggttatt 546  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  7493005 aacttaaggattcatgattgttaaaatctaatttcaattgatggttatt 7493053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 444 - 536
Target Start/End: Complemental strand, 7720375 - 7720283
Alignment:
Q  444 tgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt 536  Q
    |||||| |||||||||| |||| |||||||||| ||||||||||||||||||||| |||| | |||   | ||||| ||||||| ||||||||    
T  7720375 tgtagcgaagaagaaatctcaaggggttgttgtcatcagtttaacagtcttgaaagcttatgtatttctgtttgttgtaatctagtttcaatt 7720283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 17254973 - 17254895
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    |||| |||||||||||||||||||||||| ||| |||||| | |||||||| ||||||| | |||||||||||||||||    
T  17254973 gaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctagcctacgcttc 17254895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 54700687 - 54700614
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctac 222  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| | ||||||||||||    
T  54700687 gaaccctattctcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctagcctac 54700614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 18657128 - 18657052
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaac-ttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctg 229  Q
    |||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||  ||||| ||||||||||    
T  18657128 cctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagtgctctctagcttacgcttctg 18657052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 38888079 - 38888028
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  38888079 aaccctattttcacaagtttgtcgcttgcaaatttgtttattttcaatctag 38888028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 50515978 - 50515907
Alignment:
Q  158 attttcacaagtttgtcgcttgcaaacttg-ttcttttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||| ||| ||| |||||||||||| ||||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctagcctccgcttc 50515907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 7634079 - 7634167
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgtt-cttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||| |||||| ||||||||| ||| ||||||||||||| |||||||||||| |||||  |||| ||||| |||||||||| ||||||||    
T  7634079 gaactctatttccacaagtttatcgtttgcaaacttgttccttttcaatctaggtttaacgcttactagcatacgcttctg-actgcgtc 7634167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 21433655 - 21433610
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||    
T  21433655 tggaaccctattttcataagtttgtcgcttgcgaatttgttctttt 21433610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 546
Target Start/End: Original strand, 7501019 - 7501067
Alignment:
Q  498 aacttaaggattcaagattgttataatctaatttcaattgatggttatt 546  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||||||    
T  7501019 aacttaaggattcatgattattaaaatctaatttaaattgatggttatt 7501067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 536
Target Start/End: Original strand, 7502621 - 7502713
Alignment:
Q  444 tgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt 536  Q
    ||||||||||||||||| |||| ||||||| || |||||| | | ||| ||||| |||||  |||| | ||||||||||| ||| ||||||||    
T  7502621 tgtagcaaagaagaaatctcaaggggttgtagtcatcagtctcagagtattgaatacttatcgattgatgattgttataagctagtttcaatt 7502713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 7724165 - 7724082
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactg 234  Q
    |||||||||||||||   |||||||||| ||||||||| ||||||||||| || ||||||  ||||||||| |||| ||||||||||    
T  7724165 ggaaccctattttca---gtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctagcatacgtttctgtactg 7724082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 18689610 - 18689559
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaac-ttgttcttttcaatctag 202  Q
    ||||||||||| ||||||||||||| ||||||| || |||||||||||||||    
T  18689610 aaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctag 18689559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 13990767 - 13990729
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgtt 189  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  13990767 gaaccctattttcacaagtttgttacttgcaaacttgtt 13990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 22486861 - 22486792
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacg 223  Q
    |||||||||||||||| |||||||||||||||| || ||||| || || |||||| |||||||||||||||    
T  22486861 cctattttcacaagtt-gtcgcttgcaaacttggtctttttctatataggtttagcgcttgctagcctacg 22486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 9260573 - 9260610
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgtt 189  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  9260573 aaccctattttcgcaagtttgtcgtttgcaaacttgtt 9260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 10494901 - 10494954
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    ||||| ||||||||||| ||||||| |||||||||||| |||||||| ||||||    
T  10494901 ggaactctattttcacaggtttgtcacttgcaaacttgtttcttttccatctag 10494954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 36647293 - 36647380
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  36647293 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagcgcttgctagcctacgcttccgtactgcgtc 36647380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 15129387 - 15129477
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||    
T  15129387 tggaaccctattttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagcgcttgctagcctacgcttccgtactacgtc 15129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 27952407 - 27952319
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  27952407 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 27952319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 23457644 - 23457725
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctg 229  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||| ||||||    
T  23457644 ggaaccctattttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagcgcttgctagcctacacttctg 23457725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 22011436 - 22011524
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  22011436 aaccctattttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 22011524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 33655628 - 33655715
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||| |||||||| ||||| |||| ||||||||||    
T  33655628 aaccctattttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagcgcttgctaacctacacttccgtactgcgtc 33655715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 2155970 - 2156055
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  2155970 cctattttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 2156055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 33051617 - 33051706
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||| ||||| ||||| ||||    
T  33051617 gaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagcgcttgctagcctaagcttccgtactacgtc 33051706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 27956243 - 27956155
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  27956243 aaccctattttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 27956155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 31636337 - 31636425
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  31636337 aaccatattttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 31636425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 5171675 - 5171597
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||    
T  5171675 gaaccctatttttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcgcttgttaacctacgcttc 5171597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 12966475 - 12966553
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||  | ||||||||||| |||||    
T  12966475 ggaaccctattttcacaagttcgtcgcttgcgaacttgttcttttcaatctagatttaacgtttgctagcctatgcttc 12966553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 21772373 - 21772451
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| | | |||| ||||||||||    
T  21772373 ggaaccctattttcataagtttgtcgcttgcaaacttgtttttttcaatctaagtttagcgttggctaacctacgcttc 21772451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 27955657 - 27955588
Alignment:
Q  86 ttcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgtggaacc 155  Q
    |||||||||||||| ||||||| ||||||||||||| |||||| ||||||||| | ||||||||||||||    
T  27955657 ttcttacgccgttgaaagaggatatcgacgttgctcggacgaccgaagcgttttcgacgtctgtggaacc 27955588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 31634107 - 31634192
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||| | |||||||||| ||||||||||    
T  31634107 cctattttcacaagtttgtcgctagcaaacttgttcttttctatctaggtttagcgtttgctaaccctacgcttccgtactgcgtc 31634192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 28737911 - 28737982
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| ||||||  |||||||| |||||||||    
T  28737911 tattttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttgctagactacgcttc 28737982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 1518191 - 1518280
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||| ||||| ||||||||| ||||||| | |||||||||| ||| || |||||||||  |||||||| ||||||||||    
T  1518191 ggaaccctattttcataagttcgtcgcttgcgaacttgtccctttcaatctaggttaagcgcttgctaggatacgcttccgtactgcgtc 1518280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 4184929 - 4185006
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaactt-gttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||||||||||||||||| |||||  ||||||| ||||||  |||||| |||| |||||||||||||    
T  4184929 aaccctattttcacaagtttgtcgcttgcgaacttatttcttttgaatctatatttagtacttgttagcctacgcttc 4185006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 32162059 - 32162007
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  32162059 gaaccctattttcacaagtttgtcacttgcaaacttgtttcttttcgatctag 32162007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 8294582 - 8294655
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttctt-ttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| |||| |||||||  |||||||||||| |||||    
T  8294582 ctatttttacaagtttgtcgcttgcaaacgtgttcttcttctatctaagtttagcacttgctagcctatgcttc 8294655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 28737841 - 28737910
Alignment:
Q  156 ctattttcacaagttt-gtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacg 223  Q
    |||||||||||||||| ||| |||||||||||  |||||||||| || |||||| |||||||||||||||    
T  28737841 ctattttcacaagttttgtctcttgcaaacttactcttttcaatttaggtttagcgcttgctagcctacg 28737910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 32163860 - 32163773
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaactt-gttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||| |||||||||||||||| ||||| |||||||  |||||||||||||| |||||  |||| ||||||| |||||||| ||||||||    
T  32163860 aaccatattttcacaagtttgacgcttacaaacttatttcttttcaatctaggtttaacgctttctagccttcgcttctg-actgcgtc 32163773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 23456580 - 23456622
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttg-ttcttttcaat 198  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  23456580 tattttcaaaagtttgtcgcttgcaaacttgtttcttttcaat 23456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 2165899 - 2165944
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||| | |||||||| ||||||||||||||||||||| ||||||    
T  2165899 tattttgataagtttgttgcttgcaaacttgttcttttctatctag 2165944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 12123986 - 12123950
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg 187  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  12123986 gaaccatattttcacaggtttgtcgcttgcaaacttg 12123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 2189810 - 2189723
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  2189810 aaccttattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagcgcttgctagcctacgcttccgtactgcgtc 2189723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 42890394 - 42890469
Alignment:
Q  154 ccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttct 228  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  42890394 ccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagcctacgcttct 42890469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 42891753 - 42891665
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctag-cctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||| ||| ||||||    
T  42891753 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagccctacgcttccgtattgcgtc 42891665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 24731035 - 24731120
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgtt-cttttcaatct-agtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||| ||||||||||||||    
T  24731035 cctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaaatttagcgcttgctagcctacggttctgtactgcgtc 24731120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 22921939 - 22921851
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  22921939 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 22921851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 24731231 - 24731315
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgtt-cttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  24731231 ctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgcttgctagcctacgctcccgtactgcgtc 24731315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 18468647 - 18468736
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||| |||||||| ||   ||||||||||||||||    
T  18468647 ggaaccctattttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcgcttgctaacccttgcttctgtactgcgtc 18468736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 6845336 - 6845424
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  6845336 aaccctattttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 6845424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 22512135 - 22512047
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| | ||||| |||| ||||||||||    
T  22512135 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtc 22512047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 22519435 - 22519347
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| | ||||| |||| ||||||||||    
T  22519435 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtc 22519347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 22926737 - 22926649
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| || | |||||||||| ||||| ||||    
T  22926737 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgctttctaaccctacgcttccgtactacgtc 22926649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 37189866 - 37189954
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||| | |||| ||||| ||||||||||    
T  37189866 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctagttttagagcttgctaaccctaagcttccgtactgcgtc 37189954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 42890977 - 42891048
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgtggaacc 155  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  42890977 aattcttacgacgttgaaagaggagatcgacgttgctcggacgaccgaagcgtttccgacgtctgtgaaacc 42891048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 23570584 - 23570649
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgcta 216  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  23570584 aaccttattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 2687741 - 2687784
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2687741 gaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 2687784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 23571081 - 23571151
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgtggaacc 155  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||| |||| |||||||||    
T  23571081 aattcttacgccgttgaaagaggagatcgacgcttctcggacgactgaagcgtttccgacgt-tgtggaacc 23571151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 26374900 - 26374975
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgctt 226  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||  |||||||||| |||||||    
T  26374900 aaccctatttttacaagtttgtcgcttgcgaacttgttcttttcaatctaggcttaacgcttgctagcttacgctt 26374975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 42891180 - 42891109
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgtggaacc 155  Q
    |||||||||| ||||| |||||||||||||||||||||  ||||| ||||||||||| ||||||||| ||||    
T  42891180 aattcttacgacgttgaaagaggagatcgacgttgctcgtacgaccgaagcgtttccgacgtctgtgaaacc 42891109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 23573583 - 23573633
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  23573583 aaccctattttcacaagtttgtcgcttgtaaacttgttattttctatctag 23573633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 16598246 - 16598315
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatct-agtttagtgcttgcta 216  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||  ||||| ||||||| ||||||||    
T  16598246 tggaaccctattttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 22520888 - 22520823
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgcta 216  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| | ||| |||||| ||||||||    
T  22520888 aaccctattttcacaaatttgtcgcttgcaaacttgatcttttctacctaggtttagcgcttgcta 22520823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 26378031 - 26378088
Alignment:
Q  182 aacttgttcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||    
T  26378031 aacttgttcttttcaatctagatttagcgcttgctagcctacgcttccgtactacgtc 26378088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 2689144 - 2689195
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatct 200  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  2689144 ggaaccctattttcacagttttgtcgcttgcaaacttgtttcttttcaatct 2689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 14130163 - 14130242
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    |||||| ||||||||||| ||| |||||||||||||||| ||||||| |||||| ||||  |||||| ||||||||||||    
T  14130163 ggaaccttattttcacaaatttatcgcttgcaaacttgtctcttttcgatctagatttaacgcttgcaagcctacgcttc 14130242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 20693797 - 20693876
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||| ||||||||||| ||||||||||||||||||| || ||||||||||| |||||   || |||||||||||||||    
T  20693797 ggaaccatattttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggtttaaccctcgctagcctacgcttc 20693876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 2609584 - 2609547
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgtt 189  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  2609584 aaccctattttcacaagtttgtcacttgcaaacttgtt 2609547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 18180750 - 18180714
Alignment:
Q  202 gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  18180750 gtttagcgcttgctagcctacgcttccgtactgcgtc 18180714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 31915548 - 31915637
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatct-agtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||| |||||| ||||| ||||    
T  31915548 ggaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaacctaagtttagtgcttgctagcctgcgcttccgtactacgtc 31915637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 8931220 - 8931308
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||| | |||||||||| ||||||||||    
T  8931220 aaccctattttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 8931308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 12944115 - 12944192
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag-tttagtgcttgctagcctacgctt 226  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  12944115 gaaccctatttttacaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagcgcttgctagcctacgctt 12944192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 50857533 - 50857445
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  50857533 aaccctattttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 50857445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 13444074 - 13444015
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13444074 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagtgcttg 13444015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 28660837 - 28660758
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| | |||||| ||||||||||    
T  28660837 ggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgctatcctacgcttc 28660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 31913375 - 31913454
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttct 228  Q
    |||| |||||||| ||||||||||||||||||||||||||  |||||| ||| |||||| ||||||||||||| ||||||    
T  31913375 ggaaacctatttttacaagtttgtcgcttgcaaacttgtttctttcaacctaggtttagcgcttgctagcctatgcttct 31913454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 13443476 - 13443411
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgt 149  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  13443476 aattcttacgacgttgaaagaggagatcgacgttgctctgacgaccgaagcgttttcaacatctgt 13443411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 9031017 - 9031094
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgtt-cttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||| |||||| | |||||||||||| || ||||||||| || ||||||| ||||||||||||||||||    
T  9031017 aaccctattttcataagtttattgcttgcaaacttattccttttcaatataggtttagtacttgctagcctacgcttc 9031094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 40058184 - 40058103
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgtt-cttttcaatctag-tttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||| ||||||||||||||||||||| || |||||| || ||| |||| |||||||||||||||||||| |||| |||||    
T  40058184 ttttcataagtttgtcgcttgcaaacttatttcttttctatttaggtttactgcttgctagcctacgcttccgtaccgcgtc 40058103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 50713713 - 50713786
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatcta-gtttagtgcttgctagcctacg 223  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| | ||| |||||||||    
T  50713713 aaccctattttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagcggttgttagcctacg 50713786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 10927199 - 10927234
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    ||||||||||||||||||||||||||||||||||||    
T  10927199 ttttcacaagtttgtcgcttgcaaacttgttctttt 10927234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 43681465 - 43681535
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttg--ttcttttcaatcta-gtttagtgcttgctagcctacg 223  Q
    |||||||||||| |||||||||||||||||||  || ||||||||||| |||||| |||||||||| ||||    
T  43681465 ctattttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttgctagcatacg 43681535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 10925739 - 10925814
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||| |||||| |||||||||||||||||||| ||||  |||||||| || |||||| |||||||||||| ||||||    
T  10925739 gaaccatatttttacaagtttgtcgcttgcaaaattgt--ttttcaatttaggtttagcgcttgctagcctccgcttc 10925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 10928289 - 10928366
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||| |||||||||||||||||| ||| ||||||| | |||||| |||||| ||||||  ||||||||||||||||||    
T  10928289 aaccttattttcacaagtttgtcacttacaaacttatatctttttaatctaggtttagcacttgctagcctacgcttc 10928366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 28661157 - 28661080
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||| ||| |||| ||||||||||||||| ||||| ||||| || ||||||  ||||||||||||||||||    
T  28661157 aaccctatttttacaggtttttcgcttgcaaacttgtttcttatcaatttaggtttagcacttgctagcctacgcttc 28661080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 33152810 - 33152757
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||||||||||    
T  33152810 ggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttcaatctag 33152757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 23987581 - 23987653
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||||||| ||||||| |||||| ||||| ||||| ||| || |||||||| ||||||||||    
T  23987581 tattttcacaagtttgtcgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttc 23987653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 239685 - 239764
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||| || |||| ||||||| |||||| ||||||| ||| | |||||||  ||||||||||||||||||    
T  239685 ggaaccctattttcataaatttgacgcttgctaacttgtttctttttaatataagtttagcccttgctagcctacgcttc 239764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8221487 - 8221562
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatc-tagtttagtgcttgctagcctacgc 224  Q
    |||||||||||||| |||||||||| |||||||||||| ||| ||||||| | ||||||  || ||||||||||||    
T  8221487 gaaccctattttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagcactagctagcctacgc 8221562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 8967896 - 8967850
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttc 195  Q
    |||||||||||||||| | |||||||  |||||||||||||||||||    
T  8967896 tggaaccctattttcataggtttgtcatttgcaaacttgttcttttc 8967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 26981516 - 26981561
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||| |||||||| |||||||||||||||||  |||||||||||    
T  26981516 tatttttacaagtttttcgcttgcaaacttgtttctttcaatctag 26981561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 13882775 - 13882687
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  13882775 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 13882687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 5934607 - 5934691
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  5934607 cctattttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagcgcttgctagcctacgcttctg-actgcgtc 5934691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 13886245 - 13886160
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  13886245 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 13886160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 30217814 - 30217898
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgc 235  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||    
T  30217814 gaactctattttcacaagtttgtcgcttgcgaacttgttc-tttcaatctaggtttagcgcttgctagcctacgcttctatactgc 30217898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 859245 - 859157
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||| ||||||    
T  859245 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtc 859157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 1217249 - 1217161
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||| ||||||    
T  1217249 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtc 1217161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 3778799 - 3778721
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||||||||  ||||||||||||    
T  3778799 ggaaccctattttcacaagtttctcgcttgcaaacttgttcatttcaatctatatttagtgcttgtcagcctacgcttc 3778721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 4888776 - 4888687
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||| || || |||||||||||||||| ||| ||||||    
T  4888776 ggaactctattttcacaggtttgtcgcttgcaaacttgttcttttctatctaggttcagcgcatgctagcctacgcttccgtattgcgtc 4888687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 1883486 - 1883565
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgctt 226  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||    
T  1883486 tggaaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttagtgtttgctagcatacgctt 1883565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 27309705 - 27309638
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgcta 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  27309705 gaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 11000916 - 11000838
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||| ||||    
T  11000916 gaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctagcctacacttc 11000838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 1365669 - 1365742
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagccta 221  Q
    ||||||||||||||||||||||  |||||| ||||||||||| |||||||||| |||||| |||||||||||||    
T  1365669 tggaaccctattttcacaagttcatcgcttacaaacttgttcctttcaatctaggtttagcgcttgctagccta 1365742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 24840141 - 24840194
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24840141 ggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctag 24840194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 27142664 - 27142717
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27142664 ggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctag 27142717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 1369803 - 1369882
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||  |||||||||||| ||||||    
T  1369803 ggaaccctattttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggtttaacgcttgctagcctccgcttc 1369882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 1874537 - 1874626
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||| | |||||||| ||||| ||||    
T  1874537 gaaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttagtgtttgctaacatacgcttccgtactacgtc 1874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 1220529 - 1220446
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtact 233  Q
    |||||||||||||||||||||||| |||||||||||||| |||| || || |||||| | ||||| | ||||||||||||||||    
T  1220529 aaccctattttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggtttagcgtttgctaaccctacgcttctgtact 1220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 1753690 - 1753640
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaat 198  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  1753690 tggaactctattttcacaagtttgtcgcttgcaaacttgtttcttttcaat 1753640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 8063885 - 8063842
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  8063885 ttttcacaaatttatcgcttgcaaacttgttcttttcaatctag 8063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 4133364 - 4133286
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatct-agtttagtgcttgctagcctacgcttc 227  Q
    |||| |||||||||||||||||||||||| ||| |||||| | |||||||| |||||||   |||||||||||||||||    
T  4133364 gaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctagcctacgcttc 4133286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 7803122 - 7803032
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||| |||||||| |||||||| ||||||||||||| |||||||| | ||| |||||   ||||||| |||||||||| ||||||||||    
T  7803122 ggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggtttaacccttgctaacctacgcttccgtactgcgtc 7803032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 11228978 - 11229032
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatctag 202  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||    
T  11228978 tggaacccttttttcacacgtttgtcgcctgcaaacttgttctttttcaatctag 11229032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 1786680 - 1786725
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||    
T  1786680 tggaaccctattttcgcatgtttgtcgcttgcaaacttgttatttt 1786725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 6451839 - 6451762
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    |||| |||||||||| |||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||| | ||||||    
T  6451839 aaccttattttcacaggtttgtcgcttgcaaacttgtttcctttcaatctagatttagcgcttgatagctttcgcttc 6451762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 13466729 - 13466812
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttctgta 231  Q
    ||||||||||||||| ||||||||   ||||||||||| ||||||| ||| || |||||| ||||||||| |||| ||||||||    
T  13466729 ggaaccctattttcataagtttgttttttgcaaacttgtttctttttaatataggtttagcgcttgctaggctactcttctgta 13466812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 35814870 - 35814937
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgctag 217  Q
    ||||| |||||| |||||||||||||||||||| ||| |  ||||||||||| ||||||| |||||||    
T  35814870 gaaccttatttttacaagtttgtcgcttgcaaagttggttctttcaatctagatttagtgtttgctag 35814937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 11228720 - 11228758
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgtt 189  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  11228720 gaaccctatttccacaagtttgtcgcttccaaacttgtt 11228758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 8916467 - 8916379
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||| |||||| ||||||||| ||| |||||||||||||| |||| |||||| |||||  |||| ||||| |||||||||| ||||||||    
T  8916467 gaactctatttccacaagtttatcgtttgcaaacttgttcattttaaatctaggtttaacgcttactagcatacgcttctg-actgcgtc 8916379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 13886274 - 13886245
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaac 184  Q
    ||||||||||||||||||||||||||||||    
T  13886274 cctattttcacaagtttgtcgcttgcaaac 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 3536034 - 3536122
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  3536034 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 3536122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 3542245 - 3542333
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  3542245 aaccctattttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 3542333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 11658936 - 11659005
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgc 224  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  11658936 ctattttcacaagtttatcgcttgcaaatttgttcttttcaatctaggtttagtgcttgctaacctacgc 11659005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 8049049 - 8048974
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgta 231  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||| | ||| ||||||||||||||||||||||||    
T  8049049 tattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcctacgcttctgta 8048974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 27822209 - 27822119
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgtt-cttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| || || |||||| | ||||||||||||||||| ||||||||||    
T  27822209 ggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttttctatttaggtttagcgtttgctagcctacgcttccgtactgcgtc 27822119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 14238434 - 14238507
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagccta 221  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||    
T  14238434 ggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctagccta 14238507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 29340895 - 29340810
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| || |||| | |||||||||| |||||||    
T  29340895 aaccctattttcacaagtttgtcgcttgcaaacttgtttttttctatctaggtttagcgcctgctaaccctacgcttccgtactgc 29340810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 30049920 - 30050004
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||| | ||| |||||| ||||||||||    
T  30049920 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgctaacccttcgcttccgtactgcgtc 30050004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 33615593 - 33615505
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| | ||||| ||||||||| ||| ||| ||||||    
T  33615593 aaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttttgcgcttgttagcctacgtttccgtaatgcgtc 33615505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 30052207 - 30052253
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30052207 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatctag 30052253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 18727115 - 18727184
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||| | |||||||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtgtttttcaatctaggtttagcgtttgctagcctacgcttc 18727184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 12882123 - 12882200
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||||||||||||||  |||||||| |||| |||||||| ||| |||| ||||||| |||||||||    
T  12882123 aaccctattttcacaagtttgtcgctttaaaacttgtctcttctcaatctaggttcagtgtttgctagtctacgcttc 12882200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 18718279 - 18718201
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||  |||| || ||||  |||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  18718279 ttttcacaagtttgtc--ttgcgaatttgtctttttcaatctaggtttagcgcttgctagcctacacttctgtactgcgtc 18718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 22889268 - 22889345
Alignment:
Q  160 tttcacaagtttgtcgcttgcaaacttgt-tcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgc 235  Q
    ||||| ||||||||||  ||||||||||| | |||||||||||| ||||  |||||||||||||||||||||||||||    
T  22889268 tttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacgcttctgtactgc 22889345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 22910810 - 22910887
Alignment:
Q  160 tttcacaagtttgtcgcttgcaaacttgt-tcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgc 235  Q
    ||||| ||||||||||  ||||||||||| | |||||||||||| ||||  |||||||||||||||||||||||||||    
T  22910810 tttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacgcttctgtactgc 22910887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 1127258 - 1127323
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcc 219  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||    
T  1127258 ctattttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagcgctcgctagcc 1127323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 8047422 - 8047390
Alignment:
Q  205 tagtgcttgctagcctacgcttctgtactgcgt 237  Q
    |||||||||||||||||||||||||||||||||    
T  8047422 tagtgcttgctagcctacgcttctgtactgcgt 8047390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8048451 - 8048395
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttcc 140  Q
    ||||||||||||| || |||||||||||||||||||   |||||| |||||||||||    
T  8048451 aattcttacgccgctgaaagaggagatcgacgttgcaaggacgaccgaagcgtttcc 8048395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 22873822 - 22873897
Alignment:
Q  160 tttcacaagtttgtcgcttgcaaacttgt-tcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgc 235  Q
    ||||||||||||||||| ||||||||||| |||||||||| || |||||   ||||||||||||||  ||||||||||    
T  22873822 tttcacaagtttgtcgcatgcaaacttgtctcttttcaatttaggtttaacacttgctagcctacg--tctgtactgc 22873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 24443163 - 24443118
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    |||||||||||||| | ||||||||||||||||| | |||||||||    
T  24443163 tggaaccctatttttataagtttgtcgcttgcaagcctgttctttt 24443118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 33215246 - 33215201
Alignment:
Q  158 attttcacaagtttgtcgcttgcaaacttg-ttcttttcaatctag 202  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||||    
T  33215246 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctag 33215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 5128909 - 5128997
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | |||||||||||||||||||||    
T  5128909 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcctgctaaccctacgcttctgtactgcgtc 5128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 43304049 - 43303961
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcc-tacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| || |||||||| ||||||||||    
T  43304049 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccttacgcttccgtactgcgtc 43303961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 43306761 - 43306673
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  43306761 aaccctattttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtc 43306673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 2472779 - 2472690
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||| || |||||| ||||||||||||||||||  ||||||||||    
T  2472779 ggaaccctattttcacaagtttgtcggttgcaaacttgtctctttcaatttaggtttagcgcttgctagcctacgctttcgtactgcgtc 2472690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 43306287 - 43306216
Alignment:
Q  84 aattcttacgccgttgcaagaggagatcgacgttgctcagacgactgaagcgtttccaacgtctgtggaacc 155  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  43306287 aattcttacgacgttgaaagaggagatcgacgttgctcggacgaccgaagcgtttccgacgtctgtgaaacc 43306216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 3063826 - 3063738
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||| |||||  ||||||| | |||||||||  ||||||||||    
T  3063826 aaccctattttcacaagtttgtcgcttgcaaactctttcttttctatctaggtttaacgcttgctaaccctacgctttcgtactgcgtc 3063738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 3068964 - 3068876
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcc-tacgcttctgtactgcgtc 238  Q
    ||||||||||| |||||||| |  |||||||||||||||||||| ||||| |||||| |||||||| || |||||||| ||||||||||    
T  3068964 aaccctatttttacaagttttttccttgcaaacttgttcttttctatctaggtttagcgcttgctaaccatacgcttccgtactgcgtc 3068876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 365682 - 365594
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||||  || ||||| |||||  | || |||||| | ||||||||||||||||| ||| ||||||    
T  365682 gaaccctattttcacaagtttgtcgcttgggaatttgttattttctttttaggtttagcgtttgctagcctacgcttccgtaatgcgtc 365594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 33175832 - 33175912
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgt-tcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||| || |||||  | |||||||||||||||||    
T  33175832 tggaaccctattttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctagcctacgcttc 33175912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 52708841 - 52708921
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttc-ttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||| ||||| |||||| ||||| || ||||||||||    
T  52708841 tggaaccctactttcacaagtttatcgcttgcaaatttgttctttttctatctaggtttagcgcttgttaacctacgcttc 52708921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 45168401 - 45168358
Alignment:
Q  159 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  45168401 ttttcacaagtttgtcgcttgcaaacttgtttatttcaatctag 45168358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 21849054 - 21848965
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtcg 239  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||| | |||||||||| |||||||||||    
T  21849054 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgctaaccctacgcttccgtactgcgtcg 21848965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 19497395 - 19497351
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19497395 ggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 19497351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 40778875 - 40778787
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||| | | ||| |||||| ||||||||||    
T  40778875 aaccctatttttacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgttaaccctgcgcttccgtactgcgtc 40778787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 492567 - 492638
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatct-agtttagtgcttgctagccta 221  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||    
T  492567 aaccctatcttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaaatttagcgcttgctagccta 492638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 22440855 - 22440934
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||| ||| ||||||||||||||| ||| |||||||||| ||||| ||||||  ||||||||||||||||||    
T  22440855 tggaaccctattatcataagtttgtcgcttgcgaacatgttcttttctatctaggtttagcacttgctagcctacgcttc 22440934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 18252415 - 18252455
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttct 191  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  18252415 gaaccctattttcacaggtttgtcgcttgcaaacttgttct 18252455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 26140342 - 26140420
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttct-tttcaatctag-tttagtgcttgctagcctacgcttc 227  Q
    |||||||||||||| ||||||||||||||||| |||||| | ||||||||||| ||||| | |||||| |||| |||||    
T  26140342 gaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgctaacctatgcttc 26140420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 9868496 - 9868447
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaat 198  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  9868496 ggaaccctattttcacaagtttgttgcttgtaaacttgtttcttttcaat 9868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 37714 - 37786
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgctt 226  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||    
T  37714 cctattttcataagtttgtcgcttgcaaacttgttcttttcaatctaggtttagcgctttctagcttacgctt 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 49319 - 49372
Alignment:
Q  149 tggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatctag 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  49319 tggaaccctattttcataagtttgtcgcttgcaaacttgttcttctcaatctag 49372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 10663 - 10740
Alignment:
Q  160 tttcacaagtttgtcgcttgcaaacttgt-tcttttcaatctag-tttagtgcttgctagcctacgcttctgtactgc 235  Q
    ||||| ||||||||||  ||||||||||| | |||||||||||| ||||  |||||||||||||||||||||||||||    
T  10663 tttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacgcttctgtactgc 10740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 11672 - 11597
Alignment:
Q  157 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgta 231  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||| | ||| ||||||||||||||||||||||||    
T  11672 tattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcctacgcttctgta 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 9700 - 9791
Alignment:
Q  150 ggaaccctattttcacaagttt--gtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||||||| |||||  |||||||||| ||||||||| || ||||||    
T  9700 ggaaccctattttcacaagtgttagtcgcttggaaacttgttcttttcaatctaggtttaccgcttgctagcatacgcttctataatgcgtc 9791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 46806 - 46734
Alignment:
Q  168 gtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgct-agcctacgcttctgtactgcgtc 238  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||    
T  46806 gtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctcaccctacgcttccgtactgcgtc 46734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 45351 - 45310
Alignment:
Q  152 aaccctattttcacaagtttgtcgcttgcaaacttgttcttt 193  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  45351 aaccttattttcataagtttgtcgcttgcaaacttgttcttt 45310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 14850 - 14924
Alignment:
Q  155 cctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgcttct 228  Q
    ||||||||||||||||| |||||||| ||||| ||  |||||||| | |||||| ||||||||||||||||||||    
T  14850 cctattttcacaagtttttcgcttgccaacttatttatttcaatcaaggtttagcgcttgctagcctacgcttct 14924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 1657 - 1725
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagc 218  Q
    ||||| |||||| |||||||||||| |||||||||||||  |||||||||| |||||  ||||||||||    
T  1657 gaaccatattttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggtttaacgcttgctagc 1725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 16051 - 16119
Alignment:
Q  156 ctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacg 223  Q
    ||||||||| | ||||||| |||||||||||||||||||| ||||| ||||||  |||| |||||||||    
T  16051 ctattttcagatgtttgtcacttgcaaacttgttcttttctatctaggtttagcacttgttagcctacg 16119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 145733 - 145811
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcta-gtttagtgcttgctagcctacgcttc 227  Q
    |||||||||||| ||||| |||||||||||||||||| || ||||||||||| |||||| | |||||||| ||| ||||    
T  145733 gaaccctatttttacaagcttgtcgcttgcaaacttgatttttttcaatctaggtttagcgattgctagcttacacttc 145811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 16396 - 16473
Alignment:
Q  150 ggaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagcctacgctt 226  Q
    ||||| |||||||| |||||||||||||||||||||  || |||| |||||| |||||||| || ||| |||||||||    
T  16396 ggaactctattttctcaagtttgtcgcttgcaaactcattttttttaatctaggtttagtgtttactaacctacgctt 16473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 17639 - 17707
Alignment:
Q  151 gaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcta-gtttagtgcttgctagc 218  Q
    ||||| |||||| |||||||||||| |||||||||||||  |||||||||| |||||  ||||||||||    
T  17639 gaaccatattttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggtttaacgcttgctagc 17707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University