View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13177_low_8 (Length: 492)
Name: NF13177_low_8
Description: NF13177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13177_low_8 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 13716446 - 13715975
Alignment:
| Q |
17 |
aaccatcatagggagggttcaacttgtcaactcggtggttattcgcatgctagtatactccttccatgtgtatgtctggcctatctctttgattaagcag |
116 |
Q |
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| T |
13716446 |
aaccatcatagggagcgttcaacttgtcaactcggtaattattcgcatgctagtatactccttccatgtgtatgtctggcctatctctttgattaagcag |
13716347 |
T |
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| Q |
117 |
cttagaagaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgaattgtatctaggagcaatatttgcaggcccaaagttgagg |
216 |
Q |
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| T |
13716346 |
cttagaagaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgcattgtatctaggagcaatatttgcaggcccaaagttgagg |
13716247 |
T |
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| Q |
217 |
gtgggttagcactgcgagatcctttgattgttaataaaactgcaatgttgttcctttgttggaaactcatcacctctgatgagcagtgggctcttatgtg |
316 |
Q |
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| T |
13716246 |
gtgggttagcactgcgagatcctttgattgttaataaaactgcaatgttgtttctttgttggaaactcatcacctctgatgagcagtgggctcttatgtg |
13716147 |
T |
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| Q |
317 |
cagaaagagatttttcataacgagttctccgatcaaacatcatattgcttcttccatttggcttcggcttaagccttttgttcagcctgtgttgaataat |
416 |
Q |
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| T |
13716146 |
cagaaatagttttttcataacgagttctccgatcaagcatcatattgcttcttccatttggcttcggcttaagccttttgttcagcctgtgttgaataat |
13716047 |
T |
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| Q |
417 |
tctaattggaacatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtg |
488 |
Q |
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| T |
13716046 |
tctaattggaacatagggaatgtggagaatgttctcttttggaagcacatgtggcccggtgagccattggtg |
13715975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 103 - 492
Target Start/End: Complemental strand, 36634 - 36239
Alignment:
| Q |
103 |
ctttgattaagcagcttagaagaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgaattgtatctaggagcaatatttgcag |
202 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||| | || ||||||| |||| | |
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| T |
36634 |
ctttcattaaacagcttagaagaatgtttactaattttatttggagcggagatacttcaataaaaaagatttgcattgtctgtacgagcaatctttgttg |
36535 |
T |
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| Q |
203 |
gcccaaagttgagggtggg-------ttagcactgcgagatcctttgattgttaataaaactgcaatgttgttcctttgttggaaactcatcacctctga |
295 |
Q |
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| T |
36534 |
gcccaaagctggggggggggggggggttagctctgcattaccctttgattgttgataaagtggcgatgttgtttcttggttggaaacttatcacttctga |
36435 |
T |
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| Q |
296 |
tgagcagtgggctcttatgtg-cagaaagagatttttcataacgagttctccgatcaaacatcatattgcttcttccatttggcttcggcttaagccttt |
394 |
Q |
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| T |
36434 |
tgagcagagg-ctattatgtgtcagaa-gagatttttacgatcgggttctccgatccaacatcatactacttattcgatttggcctcggcttaagtcttt |
36337 |
T |
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| Q |
395 |
tgttcagcctgtgttgaataattctaattggaacatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagt |
492 |
Q |
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||| ||| ||||| |||||||| |||||| || ||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
36336 |
tgtgcagttggtgttagttaattctacttggaatattgggaatggggagaatgttctcttttggaaggacaggtggttgggtgagccgttggtgcagt |
36239 |
T |
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