View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_high_12 (Length: 288)
Name: NF13178_high_12
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 2450663 - 2450400
Alignment:
| Q |
15 |
aggttccactaagaagtgaataaccactaattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450663 |
aggttccactaagaagtgaataaccactaattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaag |
2450564 |
T |
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| Q |
115 |
aaaagcacagcaatgcaataggaaacgttacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450563 |
aaaagcacagcaatgcaataggaaacgttacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgct |
2450464 |
T |
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| Q |
215 |
ctagtacccttctgttaaccaaacgaaaatcgtttcttataatgtctagtgaaccatctactct |
278 |
Q |
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| T |
2450463 |
ctagtacccttttgttaaccaaacgaaaatcgtttcttataatgtctagtgaaccgtctactct |
2450400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 2461679 - 2461420
Alignment:
| Q |
15 |
aggttccactaagaagtgaataaccactaattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaag |
114 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
2461679 |
aggttccactaagaagcgaataaccactaatcgtatgccagggtgttcggccatacgggctccataagcaagagcttcatggtcatcaccaccgccaaag |
2461580 |
T |
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| Q |
115 |
aaaagcacagcaatgcaataggaaacgttacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgct |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2461579 |
aaaagcacagcaatgcaataggaaacattacttgcagacacatgacatgaaccaccgagcccacgatcaacaaaaattccaactgagcatgaagcatgct |
2461480 |
T |
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| Q |
215 |
ctagtacccttctgttaaccaaacgaaaatcgtttcttataatgtctagtgaaccatcta |
274 |
Q |
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| T |
2461479 |
cgagtacccttttgttaaccagtcgaaaatcatttcttataatgcctagtgaaccgtcta |
2461420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 2445899 - 2445643
Alignment:
| Q |
18 |
ttccactaagaagtgaataaccactaattgtatgccagggtgttcggccatacgagctccataagcaagagcttcacggtcatcaccaccaccaaagaaa |
117 |
Q |
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||||||||||||| |||||| ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2445899 |
ttccactaagaagcgaataatcactaatcttatgccagggtgctcggccgtacgagctccgtaagcaagagcttcacggtcatcaccaccaccaaagaaa |
2445800 |
T |
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| Q |
118 |
agcacagcaatgcaataggaaacgttacttgcagacacatgacatgaaccaccaagcccacgatcaacaaaaattccaactgagcacggtgcatgctcta |
217 |
Q |
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|||||||| | ||||| ||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| | |
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| T |
2445799 |
agcacagccacacaataagaaacattacttgcagacacatgacatgtaccaccaagtccgcgatcaacaaaaattccaactgagcatggtgcatgctcga |
2445700 |
T |
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| Q |
218 |
gtacccttctgttaaccaaacgaaaatcgtttcttataatgtctagtgaaccatcta |
274 |
Q |
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|||||||| ||||||| || |||||||| |||||| ||| ||||||||||||||||| |
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| T |
2445699 |
gtacccttttgttaacaaatcgaaaatcatttcttgtaacgtctagtgaaccatcta |
2445643 |
T |
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