View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_10 (Length: 386)
Name: NF13178_low_10
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_10 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 29268 - 29637
Alignment:
| Q |
1 |
aagtattactattctgaaaatgtagcataatagaaataatttaaagattgtcatttccccaaccttcttttttagtgacagtaacatgacctacaaatta |
100 |
Q |
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| T |
29268 |
aagtattactattctgaaaatgtagcataatagaaataatttaaagatcgtcatttccccaactttcttttttagtgacagtaacatgacctacaaatta |
29367 |
T |
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| Q |
101 |
aagtattatggatacacaagcttgatacaaaacctccagattatttaggttaaaatatgttgattcctatcatatgatttttcggcgagctcttcttttc |
200 |
Q |
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| T |
29368 |
aagtattatggatacacaagcttgatacaaaacctccagattatttaggttaaaatatgttgattcctatcatatgatttttcggcaagctcttcttttc |
29467 |
T |
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| Q |
201 |
tacttaattgcattaccattattaggccactcaaaacaaataagcaagttcacccaaatcaattggattgctgttagagtcaaggttataagtgaccttg |
300 |
Q |
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| T |
29468 |
gacttaattgcattaccattattaggccactcaaaacaaataagcaagttcacccaaatcaattggattgctgttagagtcaaggttataagtgaccttg |
29567 |
T |
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| Q |
301 |
atatgtcgctgaagcagggtgaacaagtggacatgttctttttaagaaaacaataatatacttaaaaatt |
370 |
Q |
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| T |
29568 |
atatgtcgctgaagcagggtgaacaagtggacatgttctttttaagaaaacaataatatacttaaaaatt |
29637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 15713052 - 15713164
Alignment:
| Q |
162 |
gattcctatcatatgatttttcggcgagctcttcttttctacttaattgcattaccattattaggccactc--aaaacaaataagcaagttcacccaaat |
259 |
Q |
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| T |
15713052 |
gattcctatcatatgatttttcggcaagctctt-ttttctacttcattccattaccattattaggccacccagaaaacacattagcatgttcacctaaat |
15713150 |
T |
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| Q |
260 |
caattggattgctg |
273 |
Q |
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| T |
15713151 |
caattggattgctg |
15713164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 15712924 - 15713055
Alignment:
| Q |
8 |
actattctgaaaatgtagcataatagaaataatttaaagattgtcatttccccaaccttcttttttagtgacagtaacatgacctacaaattaaagtatt |
107 |
Q |
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||||||||||| | || | || ||| ||||| ||||||||| | | || ||||| ||| ||||||||| ||||||| |||||||| ||| ||||||| |
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| T |
15712924 |
actattctgaagaggttggatcatataaatagtttaaagatcatgactttcccaattttcatttttagtgtaagtaacacgacctacacattgaagtatt |
15713023 |
T |
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| Q |
108 |
atggatacacaagcttgatacaaaacctccagatt |
142 |
Q |
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| T |
15713024 |
atggatacacaagct---tacaaaacctccagatt |
15713055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 15713236 - 15713297
Alignment:
| Q |
310 |
tgaagcagggtgaacaagtggacatgttctt-tttaagaaaacaataatatacttaaaaatt |
370 |
Q |
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||||| ||||||||||| || |||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
15713236 |
tgaagtagggtgaacaattgtacatgttcttctttaacaaaacaataatatacataaaaatt |
15713297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 8530 - 8325
Alignment:
| Q |
65 |
ttcttttttagtgacagtaacatgacctacaaattaaagtattatggatacacaagcttgatacaaaacctccagattattta---ggttaaaatatgtt |
161 |
Q |
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||||||| |||| |||||||||||| |||||||| |||| ||| || || || ||||||| ||||||||| ||| ||| |||||||||||||| |
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| T |
8530 |
ttcttttcgagtgtcagtaacatgacttacaaattcaagtccgatgcatgcaaaatcttgatagcaaacctccatattctttgtttggttaaaatatgtt |
8431 |
T |
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| Q |
162 |
gattcctatcatatgatttttcggcgagctcttcttttctacttaattgcattaccattattaggccactc--aaaacaaataagcaagttcacccaaat |
259 |
Q |
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||||| ||||||| | ||||| ||| |||||||| || ||||||||| |||||| | |||||||||| | |||||| || ||||||||||||||||| |
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| T |
8430 |
gattcatatcataaggttttttggcaagctcttccttggtacttaattccattacaacaattaggccacccaaaaaacacattagcaagttcacccaaat |
8331 |
T |
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| Q |
260 |
caattg |
265 |
Q |
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|||||| |
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| T |
8330 |
caattg |
8325 |
T |
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