View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_13 (Length: 268)
Name: NF13178_low_13
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 13615587 - 13615337
Alignment:
| Q |
6 |
atcaaaatccaatgtttcagacttaaagtgttccttactgataaaacgtaacaacaggtgatctaaatcaactgtaatcagatctttttcaagatgtacg |
105 |
Q |
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| T |
13615587 |
atcaaaatccaatgtttcagacttaaagtgttccttactgataaaacgtagcaacaggtgatctaaatcaactgtaatcagatctttttcaacatgtacg |
13615488 |
T |
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| Q |
106 |
ggaatatagttgaaagagctcattcctgctggttcatcttgaaaaccgagaccgaaccaactaagacgctttattccttcacctaaactatttggatcat |
205 |
Q |
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| T |
13615487 |
ggaatatagttgaaagagctcattcctgctggttcatcttgaaaaccgagaccgaaccaactaagacgctttattccttcacctaaactatttggatcat |
13615388 |
T |
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| Q |
206 |
catgtgctacaaatgttaagcaacaagccacaccaatccagttcttctcac |
256 |
Q |
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| T |
13615387 |
catgtgctacaaatgttaagcaacaagccacaccaatgcagttcttttcac |
13615337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 31304726 - 31304676
Alignment:
| Q |
175 |
tttattccttcacctaaactatttggatcatcatgtgctacaaatgttaag |
225 |
Q |
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| T |
31304726 |
tttattccttcacctaaactatttggatcatcatgtgctacaaatgttaag |
31304676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 31247787 - 31247733
Alignment:
| Q |
57 |
caacaggtgatctaaatcaactgtaatcagatctttttcaagatgtacgggaata |
111 |
Q |
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| T |
31247787 |
caacaagtgatctaaatcaactgtgaccagatcttttccaagatgtatgggaata |
31247733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 31213248 - 31213206
Alignment:
| Q |
183 |
ttcacctaaactatttggatcatcatgtgctacaaatgttaag |
225 |
Q |
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| T |
31213248 |
ttcacctaaattagttggatcatcatgtgctacaaaagttaag |
31213206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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