View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_2 (Length: 682)
Name: NF13178_low_2
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 378 - 667
Target Start/End: Complemental strand, 5016609 - 5016322
Alignment:
| Q |
378 |
aagaaatagaagattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttgatttccatagtga |
477 |
Q |
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| T |
5016609 |
aagaaatagaaaattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttggtttccatagtga |
5016510 |
T |
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| Q |
478 |
gggatattcatataaggtacgagtgttacaattataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagcattaagggttttgacca |
577 |
Q |
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| T |
5016509 |
gggatattcgtataaggtacgagtgttacaactataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagca-taagggttttgacca |
5016411 |
T |
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| Q |
578 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactcaaagtgttgttttagattttgtctctg |
667 |
Q |
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| T |
5016410 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactc-aagtgttgttttagattttgtctctg |
5016322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 5017372 - 5017200
Alignment:
| Q |
23 |
tgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaagaattactactactgttgctgtcaagagccatatctggttcaactttgt |
122 |
Q |
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| T |
5017372 |
tgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaataattactactactgttgctgtcaagagccatatctggttcaactttgt |
5017273 |
T |
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| Q |
123 |
cttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaaatgtaa |
195 |
Q |
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| T |
5017272 |
cttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaactgtaa |
5017200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 191 - 337
Target Start/End: Complemental strand, 5016750 - 5016606
Alignment:
| Q |
191 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttttaataaatacatcattagcatttcatcttcaaatgcaaatgt |
290 |
Q |
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| T |
5016750 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttt-aataaatacatcattagcatttcatcttcaaatgcaaatgt |
5016652 |
T |
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| Q |
291 |
ctcaaatctcgtcattaacaaagctaaaacgaaggagaaagcgaaga |
337 |
Q |
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| T |
5016651 |
ctcaaatctcgtcattaac-aagctaaaacgaaggagaaagcgaaga |
5016606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 5005339 - 5005292
Alignment:
| Q |
118 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaa |
165 |
Q |
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| T |
5005339 |
tttgtcctgcgtgttctgctaatcatattcatcttaatcaaatgaaaa |
5005292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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