View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_3 (Length: 635)
Name: NF13178_low_3
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 36151468 - 36150861
Alignment:
| Q |
18 |
agaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151468 |
agaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaa |
36151369 |
T |
|
| Q |
118 |
cttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151368 |
cttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaataga |
36151269 |
T |
|
| Q |
218 |
aacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151268 |
aacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatct |
36151169 |
T |
|
| Q |
318 |
tctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaagacggatta |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36151168 |
tctggtgcaaaaatggttaacccaccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggatta |
36151069 |
T |
|
| Q |
418 |
gaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36151068 |
gaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagctggtgttgt |
36150969 |
T |
|
| Q |
518 |
tggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtggtgatgga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36150968 |
tggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtggtgatgga |
36150869 |
T |
|
| Q |
618 |
gatgatgt |
625 |
Q |
| |
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|||||||| |
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| T |
36150868 |
gatgatgt |
36150861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 36154854 - 36154247
Alignment:
| Q |
18 |
agaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154854 |
agaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaa |
36154755 |
T |
|
| Q |
118 |
cttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154754 |
cttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaataga |
36154655 |
T |
|
| Q |
218 |
aacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154654 |
aacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatct |
36154555 |
T |
|
| Q |
318 |
tctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaagacggatta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154554 |
tctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggatta |
36154455 |
T |
|
| Q |
418 |
gaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154454 |
gaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgt |
36154355 |
T |
|
| Q |
518 |
tggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtggtgatgga |
617 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
36154354 |
tggaacaagcggaactgtacttaatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaagggtggtgagggt |
36154255 |
T |
|
| Q |
618 |
gatgatgt |
625 |
Q |
| |
|
|||||||| |
|
|
| T |
36154254 |
gatgatgt |
36154247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 162 - 441
Target Start/End: Complemental strand, 5273832 - 5273544
Alignment:
| Q |
162 |
tcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgacttttt |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| || || || | |||||| | ||| | ||| || ||||| ||||| ||||| | |
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|
| T |
5273832 |
tcatcaccggcttgtgtttgaaccgggttggttaaggtgtcgaagttcgagattgagatgaatgaggaaagtgtgtggaattgtaacagttctactttgt |
5273733 |
T |
|
| Q |
262 |
gtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaaccctcc------ggaacctgatgg |
355 |
Q |
| |
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|||| ||| ||||||| || ||||| |||| ||||||||| || || ||| |||||||||||||||| |||||| || || ||| |||||| |
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|
| T |
5273732 |
gtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccaccactgctagaatctgatga |
5273633 |
T |
|
| Q |
356 |
cgatgat---accagctgtgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
441 |
Q |
| |
|
|||||| || || |||||||||||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||||| |
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|
| T |
5273632 |
tgatgatgtaactagttgtgagttgagttggtttattaactgagttgttttgagaagacgaatgagaactgagaatctttttgcttttt |
5273544 |
T |
|
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